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multi-omics tutorial #8
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Hello @dorothyzh , Thank you for your comment. We added a quick explanation of the 3 ways of handling multi-omic datas: https://github.com/gregbellan/Stabl/blob/main/Notebook%20examples/Handling%20Multi-omics.docx I closed the issue with this file. |
Thanks, but if I would like to use the third way, which function should I use for stable? And for multi_omic_stabl_cv function, the plotting always have some bugs inside, could you provide a multi-omics tutorial similar as the "STABL in single-omic" one in the tutorial, then we could directly get the stabl object and omit plotting issues. |
Thank you @dorothyzh for your comment. Is it possible for you to describe the issues you encountered? You can use this template: Describe the bugA clear and concise description of what the bug is. How To ReproduceDescribe steps and provide code if possible Expected behaviorA clear and concise description of what you expected to happen. PriorityWhat is the impact of this bug on the user, how critical is to fix? P0, P1 .. P4 Reference - Google Issue tracker priority levels DesktopOS: [e.g. MacOS, Linux, Windows] Additional contextAdd any other context about the problem here. |
Thanks for the comment, and may I ask for some detailed description of the results, for instance, is there any more detailed results other than feature names that we can get from the object "stabl_regression". Such as the predicted values or p value or any statistics for these features? |
Hi @dorothyzh , You have multiple attributes of the Stabl object that you can use. For example, the parameter Stabl's main purpose is the feature selection so a predicted value is not meaningful, as it implements |
As the issue seems resolved. I close the github issue. |
For the tutorial, only shows the single omics analysis using Stabl, but the cyto_ool and other datasets were not used in the tutorial. So could I find the tutorial or the codes for multi-omics elsewhere?
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