You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I'm receiving the following error when attempting to use replaceanc: $ glactools replaceanc chr1.pops.acf.gz chr1.ancroot.acf.gz > ancrooted.chr1.acf.gz
GlacReplaceAncestor: The SQ fields differ in the header, are they from the same reference?
Is there a way to override or force glactools to accept that the references are the same, or to use one over the other? The reference genomes I used were the same sequences, but with differing sequence names - I had to shorten the names whilst generating the ancestral and root vcfs and that may be causing this issue downstream.
Failing that, is there a way to manually edit the headers of acf files?
Cheers
Cooper
The text was updated successfully, but these errors were encountered:
Dear Gabriel,
I'm receiving the following error when attempting to use replaceanc:
$ glactools replaceanc chr1.pops.acf.gz chr1.ancroot.acf.gz > ancrooted.chr1.acf.gz
GlacReplaceAncestor: The SQ fields differ in the header, are they from the same reference?
Is there a way to override or force glactools to accept that the references are the same, or to use one over the other? The reference genomes I used were the same sequences, but with differing sequence names - I had to shorten the names whilst generating the ancestral and root vcfs and that may be causing this issue downstream.
Failing that, is there a way to manually edit the headers of acf files?
Cheers
Cooper
The text was updated successfully, but these errors were encountered: