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cudaErrorIllegalAddress: an illegal memory access was encountered #50

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tothuhien opened this issue Oct 1, 2021 · 1 comment
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@tothuhien
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tothuhien commented Oct 1, 2021

Hi,
I have encountered the following error why trying to align 2 genomes of size ~ 2-3 Gb. Is it related to the allocation of memory or a bug? Thanks a lot.
Hien

Using 2 threads
Using 1 GPU(s)

Reading query file ...

Reading target file ...

Start alignment ...

Sending reference block 0 ...

Sending query block 0 with buffer 0 ...

Sending query block 1 with buffer 1 ...
Query block 0, interval 1/56 (0:10000000) with buffer 0
Query block 0, interval 2/56 (10000000:20000000) with buffer 0
terminate called after throwing an instance of 'thrust::system::system_error'
  what():  CUDA free failed: cudaErrorIllegalAddress: an illegal memory access was encountered
/usr/local/bin/run_segalign: line 197: 30983 Aborted                 stdbuf -oL segalign $refPath $queryPath $DATA_FOLDER $optionalArguments
@gsneha26
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gsneha26 commented Oct 1, 2021

Could you share the files and the command you used?

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