Re-analysis of Itajai data accounting for multiple bias sources

Getting the data

download the zip file from osf.io/uxhaf into the data/ folder and unzip into a new directory called "kerr"
Download https://s3.sa-east-1.amazonaws.com/ckan.saude.gov.br/SRAG/2022/INFLUD20-26-09-2022.csv and put it into /data

Table 1 and Figure 1 can be generated by running src/compare_sus_kerr.R
Main simulations can be built by running src/main_simulations.R This can take a while.
Figure 2 can be generated by running src/immortal_time_bias-KC22.R
Table 2 can be generated by running src/table_2.R.
Table 3 can be generated by running src/table_3.R.
Figure 3 can be generated by running src/immortal_time_bias0-KB22.R
Table 4 (the main result) and all supplemental tables can be generated by running src/main_and_supplemental_tables.R.