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After running the following command cgmaptools snv -m bayes --bayes-dynamicP -i AK0H.ATCGmap.gz -v filename.VCF, I get an output file containing only header information as follows:
##fileformat=VCFv4.2
##fileDate=20230217
##source=CGmapTools
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=GU,Number=.,Type=String,Description="Genotype is Unidentified:R=A/G, Y=T/C">
##FILTER=<ID=q10,Description="Quality below 10">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001
I appreciate any help to resolve this problem.
Relindis
The text was updated successfully, but these errors were encountered:
Hi, Dr Guo,
After running the following command cgmaptools snv -m bayes --bayes-dynamicP -i AK0H.ATCGmap.gz -v filename.VCF, I get an output file containing only header information as follows:
##fileformat=VCFv4.2
##fileDate=20230217
##source=CGmapTools
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=GU,Number=.,Type=String,Description="Genotype is Unidentified:R=A/G, Y=T/C">
##FILTER=<ID=q10,Description="Quality below 10">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001
I appreciate any help to resolve this problem.
Relindis
The text was updated successfully, but these errors were encountered: