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PPF

PPF (Protein Predition Framework) is a framework based on Rosetta for researching ab inition protein tertiary structure predction.

How to use:

  • git clone https://github.com/h3nnn4n/protein-prediction-framework
  • cd protein-prediction-framework
  • git submodule update --init
  • cd src/external
  • git submodule update --init
  • cd tmscore/src
  • gfortran TMscore.f -o TMscore
  • cd ../../../
  • cd src/de
  • gfortran spicker.f -o spicker
  • python -m pip install mock
  • python -m pip install multiprocessing
  • python -m pip install numpy
  • python -m pip install pytest
  • python -m pip install types
  • python -m pip install uuid
  • python -m pip install yaml
  • python -m pip install scipy
  • python3 main.py

LICENSE

All files in this repository are released under GPLv3 license, unless noted otherwise. See LICENSE for more details.

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A PyRosetta based framework for protein structure prediction

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