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missing dependency: pyrsistent #47

Open
thawn opened this issue Jan 15, 2024 · 2 comments
Open

missing dependency: pyrsistent #47

thawn opened this issue Jan 15, 2024 · 2 comments

Comments

@thawn
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thawn commented Jan 15, 2024

I just installed devbio-napari into a fresh environment with this command (note that I am using python 3.11):

mamba create --name devbio-napari-env python=3.11 devbio-napari pyqt -c conda-forge -c pytorch

When I then try to start naparia, I get a module not found exception complaining that the module pyrsistent is not installed

installing pyrsistent fixed the issue for me:

mamba install pyrsistent

afterwards, naparia starts fine.

I am on a M1 mac, using arm64 python binaries.
@haesleinhuepf
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Owner

The pyresistent dependency was removed in napari-assistant 0.4.6 in August 2023.

Can you give us the full log of the installation? I'd like to see which version of napari-assistant and other dependencies are installed...

@thawn
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Author

thawn commented Jan 15, 2024 •
edited
Loading

napari-assistant=0.4.4
devbio-napari=0.10.1

I now tried on several different windows machines - always with the same result.

Cheers,

Till

full installation log

Looking for: ['python=3.11', 'devbio-napari', 'pyqt']

pytorch/win-64 (check zst) Checked 0.2s
pytorch/noarch (check zst) Checked 0.2s
conda-forge/win-64 No change
pkgs/main/win-64 No change
conda-forge/noarch No change
pkgs/msys2/noarch No change
pkgs/main/noarch No change
pytorch/noarch 10.8kB @ 70.1kB/s 0.2s
pkgs/r/win-64 No change
pytorch/win-64 137.3kB @ 736.9kB/s 0.2s
pkgs/r/noarch No change
pkgs/msys2/win-64 No change
Transaction

Prefix: C:\Users\Till\mambaforge\envs\devbio-napari-env

Updating specs:

  • python=3.11
  • devbio-napari
  • pyqt

Package Version Build Channel Size

Install:

  • libexpat 2.5.0 h63175ca_1 conda-forge Cached
  • ucrt 10.0.22621.0 h57928b3_0 conda-forge Cached
  • python_abi 3.11 4_cp311 conda-forge 7kB
  • ca-certificates 2023.11.17 h56e8100_0 conda-forge Cached
  • intel-openmp 2023.2.0 h57928b3_50497 conda-forge 3MB
  • msys2-conda-epoch 20160418 1 conda-forge Cached
  • pandoc 3.1.3 h57928b3_0 conda-forge 19MB
  • winpty 0.4.3 4 conda-forge 1MB
  • expat 2.5.0 h63175ca_1 conda-forge 227kB
  • vc14_runtime 14.38.33130 h82b7239_18 conda-forge Cached
  • m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge Cached
  • m2w64-gmp 6.1.0 2 conda-forge Cached
  • vs2015_runtime 14.38.33130 hcb4865c_18 conda-forge Cached
  • vc 14.3 hcf57466_18 conda-forge Cached
  • m2w64-gcc-libs-core 5.3.0 7 conda-forge Cached
  • libsodium 1.0.18 h8d14728_1 conda-forge 713kB
  • libzopfli 1.0.3 h0e60522_0 conda-forge 208kB
  • eigen 3.4.0 h91493d7_0 conda-forge 1MB
  • x264 1!164.3095 h8ffe710_2 conda-forge 1MB
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  • yaml 0.2.5 h8ffe710_2 conda-forge 63kB
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  • zlib-ng 2.0.7 hcfcfb64_0 conda-forge 91kB
  • libogg 1.3.4 h8ffe710_1 conda-forge 35kB
  • zfp 1.0.1 h63175ca_0 conda-forge 236kB
  • snappy 1.1.10 hfb803bf_0 conda-forge 57kB
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  • dav1d 1.2.1 hcfcfb64_0 conda-forge 619kB
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  • pthreads-win32 2.9.1 hfa6e2cd_3 conda-forge 144kB
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  • xz 5.2.6 h8d14728_0 conda-forge Cached
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  • bzip2 1.0.8 hcfcfb64_5 conda-forge Cached
  • openssl 3.2.0 hcfcfb64_1 conda-forge Cached
  • icu 70.1 h0e60522_0 conda-forge 18MB
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  • m2w64-gcc-libgfortran 5.3.0 6 conda-forge Cached
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  • libvorbis 1.3.7 h0e60522_0 conda-forge 274kB
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  • m2w64-gcc-libs 5.3.0 7 conda-forge Cached
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  • pthread-stubs 0.4 hcd874cb_1001 conda-forge Cached
  • xorg-libxau 1.0.11 hcd874cb_0 conda-forge Cached
  • brotli 1.0.9 hcfcfb64_9 conda-forge 20kB
  • openjpeg 2.5.0 hc9384bd_1 conda-forge 263kB
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  • pip 23.3.2 pyhd8ed1ab_0 conda-forge Cached
  • sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_0 conda-forge 10kB
  • pycparser 2.21 pyhd8ed1ab_0 conda-forge Cached
  • win_inet_pton 1.1.0 pyhd8ed1ab_6 conda-forge Cached
  • types-python-dateutil 2.8.19.20240106 pyhd8ed1ab_0 conda-forge 22kB
  • parso 0.8.3 pyhd8ed1ab_0 conda-forge 71kB
  • json5 0.9.14 pyhd8ed1ab_0 conda-forge 25kB
  • wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge 33kB
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  • executing 2.0.1 pyhd8ed1ab_0 conda-forge 28kB
  • aiofiles 22.1.0 pyhd8ed1ab_0 conda-forge 18kB
  • cached_property 1.5.2 pyha770c72_1 conda-forge 11kB
  • sniffio 1.3.0 pyhd8ed1ab_0 conda-forge 14kB
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  • webencodings 0.5.1 pyhd8ed1ab_2 conda-forge 16kB
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  • ipython_genutils 0.2.0 py_1 conda-forge 22kB
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  • mypy_extensions 1.0.0 pyha770c72_0 conda-forge 10kB
  • charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge Cached
  • idna 3.6 pyhd8ed1ab_0 conda-forge Cached
  • widgetsnbextension 4.0.9 pyhd8ed1ab_0 conda-forge 886kB
  • shellingham 1.5.4 pyhd8ed1ab_0 conda-forge 15kB
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  • qt-main 5.15.8 h720456b_6 conda-forge 60MB
  • pyqt 5.15.9 py311h125bc19_5 conda-forge 4MB
  • urllib3 2.1.0 pyhd8ed1ab_0 conda-forge Cached
  • referencing 0.32.1 pyhd8ed1ab_0 conda-forge 39kB
  • ypy-websocket 0.8.2 pyhd8ed1ab_0 conda-forge 17kB
  • jupyter_ydoc 0.2.4 pyhd8ed1ab_0 conda-forge 80kB
  • terminado 0.18.0 pyh5737063_0 conda-forge 23kB
  • send2trash 1.8.2 pyh08f2357_0 conda-forge 23kB
  • jinja2 3.1.3 pyhd8ed1ab_0 conda-forge Cached
  • mako 1.3.0 pyhd8ed1ab_0 conda-forge 67kB
  • deprecated 1.2.14 pyh1a96a4e_0 conda-forge 14kB
  • psygnal 0.9.5 pyhd8ed1ab_0 conda-forge 56kB
  • patsy 0.5.6 pyhd8ed1ab_0 conda-forge 187kB
  • transforms3d 0.4.1 pyhd8ed1ab_0 conda-forge 3MB
  • pyqtgraph 0.13.3 pyhd8ed1ab_0 conda-forge 686kB
  • dask-core 2024.1.0 pyhd8ed1ab_0 conda-forge 871kB
  • ipycanvas 0.13.1 pyhd8ed1ab_0 conda-forge 154kB
  • imageio 2.33.1 pyh8c1a49c_0 conda-forge 291kB
  • pydantic-compat 0.1.1 pyhd8ed1ab_0 conda-forge 17kB
  • jupyter_client 7.4.9 pyhd8ed1ab_0 conda-forge 99kB
  • zarr 2.16.1 pyhd8ed1ab_0 conda-forge 158kB
  • tifffile 2022.10.10 pyhd8ed1ab_0 conda-forge 163kB
  • argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge 19kB
  • seaborn-base 0.13.1 pyhd8ed1ab_0 conda-forge 235kB
  • pynndescent 0.5.11 pyhca7485f_0 conda-forge 49kB
  • requests 2.31.0 pyhd8ed1ab_0 conda-forge Cached
  • jsonschema-specifications 2023.12.1 pyhd8ed1ab_0 conda-forge 16kB
  • reikna 0.8.0 pyhd8ed1ab_0 conda-forge 97kB
  • npe2 0.6.2 pyhd8ed1ab_0 conda-forge 74kB
  • napari-svg 0.1.10 pyhd8ed1ab_0 conda-forge 17kB
  • app-model 0.2.4 pyhd8ed1ab_0 conda-forge 53kB
  • ipykernel 6.28.0 pyha63f2e9_0 conda-forge 117kB
  • czifile 2019.7.2 pyh9f0ad1d_0 conda-forge 18kB
  • sphinx 4.5.0 pyh6c4a22f_0 conda-forge 2MB
  • pooch 1.8.0 pyhd8ed1ab_0 conda-forge 52kB
  • pyconify 0.1.6 pyhd8ed1ab_0 conda-forge 23kB
  • jsonschema 4.20.0 pyhd8ed1ab_0 conda-forge 72kB
  • jupyter_console 6.6.3 pyhd8ed1ab_0 conda-forge 26kB
  • qtconsole-base 5.5.1 pyha770c72_0 conda-forge 100kB
  • numpydoc 1.5.0 pyhd8ed1ab_0 conda-forge 47kB
  • superqt 0.6.1 pyh9208f05_0 conda-forge 72kB
  • jsonschema-with-format-nongpl 4.20.0 pyhd8ed1ab_0 conda-forge 7kB
  • nbformat 5.9.2 pyhd8ed1ab_0 conda-forge 100kB
  • napari-console 0.0.9 pyh9208f05_0 conda-forge 14kB
  • magicgui 0.8.1 pyhd8ed1ab_0 conda-forge 95kB
  • jupyter_events 0.9.0 pyhd8ed1ab_0 conda-forge 21kB
  • nbclient 0.8.0 pyhd8ed1ab_0 conda-forge 65kB
  • jupytext 1.16.1 pyhd8ed1ab_0 conda-forge 103kB
  • nbconvert-core 7.14.1 pyhd8ed1ab_0 conda-forge 188kB
  • nbconvert-pandoc 7.14.1 pyhd8ed1ab_0 conda-forge 7kB
  • jupyter_server 1.24.0 pyhd8ed1ab_0 conda-forge 244kB
  • nbconvert 7.14.1 pyhd8ed1ab_0 conda-forge 8kB
  • jupyter_server_fileid 0.9.1 pyhd8ed1ab_0 conda-forge 20kB
  • jupyterlab_server 2.25.2 pyhd8ed1ab_0 conda-forge 49kB
  • notebook-shim 0.2.3 pyhd8ed1ab_0 conda-forge 17kB
  • jupyter_server_ydoc 0.8.0 pyhd8ed1ab_0 conda-forge 15kB
  • nbclassic 1.0.0 pyhb4ecaf3_1 conda-forge 6MB
  • notebook 6.5.6 pyha770c72_0 conda-forge 307kB
  • jupyter 1.0.0 pyhd8ed1ab_10 conda-forge 9kB
  • jupyterlab 3.6.6 pyhd8ed1ab_0 conda-forge 5MB
  • pyopencl 2023.1.4 py311hce000fb_0 conda-forge 705kB
  • statsmodels 0.14.1 py311h59ca53f_0 conda-forge 12MB
  • scikit-image 0.22.0 py311hf63dbb6_2 conda-forge 10MB
  • umap-learn 0.5.5 py311h1ea47a8_0 conda-forge 191kB
  • redlionfish 0.9 py311h1ea47a8_3 conda-forge 42kB
  • seaborn 0.13.1 hd8ed1ab_0 conda-forge 7kB
  • stackview 0.7.4 pyhd8ed1ab_0 conda-forge 29kB
  • pyclesperanto-prototype 0.24.2 pyhd8ed1ab_0 conda-forge 221kB
  • napari 0.4.18 pyh9208f05_3 conda-forge 2MB
  • apoc-backend 0.12.0 pyhd8ed1ab_0 conda-forge 24kB
  • napari-workflows 0.2.10 pyhd8ed1ab_0 conda-forge 20kB
  • napari-tools-menu 0.1.19 pyhd8ed1ab_0 conda-forge 13kB
  • napari-roi 0.1.8 pyhd8ed1ab_0 conda-forge 18kB
  • napari-pystackreg 0.1.4 pyhd8ed1ab_0 conda-forge 22kB
  • napari-czifile2 0.2.7 pyhd8ed1ab_0 conda-forge 10kB
  • napari-animation 0.0.7 pyhd8ed1ab_0 conda-forge 30kB
  • napari-3d-ortho-viewer 0.1.5 pyhd8ed1ab_0 conda-forge 17kB
  • platymatch 0.0.3 pyhd8ed1ab_0 conda-forge 31kB
  • napari-blob-detection 0.0.2 pyhd8ed1ab_0 conda-forge 12kB
  • napari-workflow-inspector 0.2.2 pyhd8ed1ab_0 conda-forge 12kB
  • napari-time-slicer 0.5.0 pyhd8ed1ab_0 conda-forge 15kB
  • napari-skimage-regionprops 0.10.1 pyhd8ed1ab_0 conda-forge 33kB
  • napari-layer-details-display 0.1.5 pyhd8ed1ab_0 conda-forge 11kB
  • napari-crop 0.1.9 pyhd8ed1ab_0 conda-forge 18kB
  • napari-brightness-contrast 0.1.8 pyhd8ed1ab_0 conda-forge 13kB
  • napari-tabu 0.1.5 pyhd8ed1ab_0 conda-forge 10kB
  • napari-plugin-search 0.1.3 pyhd8ed1ab_0 conda-forge 10kB
  • napari-mouse-controls 0.1.3 pyhd8ed1ab_0 conda-forge 32kB
  • napari-folder-browser 0.1.3 pyhd8ed1ab_0 conda-forge 10kB
  • napari-curtain 0.1.1 pyhd8ed1ab_0 conda-forge 9kB
  • napari-workflow-optimizer 0.1.4 pyhd8ed1ab_0 conda-forge 19kB
  • napari-accelerated-pixel-and-object-classification 0.14.0 pyhd8ed1ab_0 conda-forge 29kB
  • napari-assistant 0.4.4 pyhd8ed1ab_0 conda-forge 285kB
  • napari-clusters-plotter 0.7.3 pyhd8ed1ab_0 conda-forge 93kB
  • the-segmentation-game 0.2.0 pyhd8ed1ab_0 conda-forge 16kB
  • napari-plot-profile 0.2.2 pyhd8ed1ab_0 conda-forge 15kB
  • napari-simpleitk-image-processing 0.4.5 pyhd8ed1ab_0 conda-forge 20kB
  • napari-segment-blobs-and-things-with-membranes 0.3.6 pyhd8ed1ab_0 conda-forge 18kB
  • napari-pyclesperanto-assistant 0.22.1 pyhd8ed1ab_0 conda-forge 238kB
  • devbio-napari 0.10.1 win_h08f2357_0 conda-forge 14kB

Summary:

Install: 384 packages

Total download: 625MB

Confirm changes: [Y/n]
python_abi 6.8kB @ 46.7kB/s 0.1s
expat 226.6kB @ 1.1MB/s 0.2s
winpty 1.2MB @ 4.5MB/s 0.3s
libopus 260.6kB @ 951.1kB/s 0.1s
intel-openmp 2.5MB @ 8.5MB/s 0.3s
zfp 235.9kB @ 709.4kB/s 0.1s
giflib 83.6kB @ 232.3kB/s 0.1s
dav1d 618.6kB @ 1.4MB/s 0.2s
jpeg 289.4kB @ 669.2kB/s 0.1s
charls 103.6kB @ 234.3kB/s 0.1s
libbrotlienc 236.0kB @ 420.6kB/s 0.1s
pandoc 18.7MB @ 28.8MB/s 0.6s
x265 5.5MB @ 8.1MB/s 0.5s
krb5 717.3kB @ 1.0MB/s 0.1s
c-blosc2 208.8kB @ 278.3kB/s 0.1s
brotli 20.3kB @ 26.3kB/s 0.1s
tbb 154.7kB @ 192.7kB/s 0.1s
cfitsio 559.5kB @ 666.5kB/s 0.1s
libhwloc 2.5MB @ 2.9MB/s 0.2s
font-ttf-inconsolata 96.5kB @ 99.3kB/s 0.1s
zeromq 9.4MB @ 9.0MB/s 0.6s
fonts-conda-forge 4.1kB @ 3.8kB/s 0.1s
libcblas 5.0MB @ 4.5MB/s 0.3s
libclang13 21.9MB @ 19.7MB/s 0.7s
parso 71.0kB @ 61.1kB/s 0.1s
pure_eval 14.6kB @ 12.1kB/s 0.1s
cached_property 11.1kB @ 9.2kB/s 0.1s
jupyterlab_widgets 186.8kB @ 141.8kB/s 0.1s
rfc3986-validator 7.8kB @ 5.7kB/s 0.1s
ffmpeg 11.3MB @ 8.2MB/s 0.3s
attrs 54.6kB @ 39.3kB/s 0.2s
mistune 66.0kB @ 46.5kB/s 0.0s
pandocfilters 11.6kB @ 8.1kB/s 0.1s
prometheus_client 48.5kB @ 33.7kB/s 0.1s
mypy_extensions 10.5kB @ 7.1kB/s 0.0s
fasteners 20.0kB @ 13.5kB/s 0.1s
win32_setctime 7.4kB @ 4.9kB/s 0.1s
sphinxcontrib-htmlhelp 32.8kB @ 21.6kB/s 0.0s
in-n-out 23.0kB @ 14.8kB/s 0.1s
snowballstemmer 58.8kB @ 37.8kB/s 0.1s
zipp 19.0kB @ 12.1kB/s 0.0s
webencodings 15.6kB @ 9.8kB/s 0.4s
appdirs 12.8kB @ 8.0kB/s 0.1s
pyopengl 887.8kB @ 547.6kB/s 0.1s
imageio-ffmpeg 20.7kB @ 12.7kB/s 0.1s
munkres 12.5kB @ 7.5kB/s 0.1s
cycler 13.5kB @ 8.1kB/s 0.1s
typing_extensions 36.1kB @ 21.6kB/s 0.1s
joblib 221.2kB @ 131.0kB/s 0.1s
hsluv 11.6kB @ 6.6kB/s 0.1s
networkx 1.1MB @ 655.7kB/s 0.1s
prompt-toolkit 270.4kB @ 154.1kB/s 0.1s
tinycss2 23.2kB @ 13.2kB/s 0.1s
importlib_resources 30.0kB @ 16.6kB/s 0.1s
importlib-metadata 26.4kB @ 14.6kB/s 0.1s
comm 12.2kB @ 6.7kB/s 0.1s
partd 20.7kB @ 11.4kB/s 0.1s
typing-extensions 10.2kB @ 5.5kB/s 0.0s
fqdn 14.4kB @ 7.7kB/s 0.0s
bleach 131.2kB @ 70.5kB/s 0.1s
pytools 70.7kB @ 37.8kB/s 0.1s
arrow 100.1kB @ 52.4kB/s 0.1s
importlib_metadata 9.6kB @ 5.0kB/s 0.1s
typer 79.1kB @ 41.3kB/s 0.1s
ipywidgets 114.2kB @ 59.5kB/s 0.1s
brotli-python 308.8kB @ 156.9kB/s 0.1s
msgpack-python 191.6kB @ 95.9kB/s 0.1s
tornado 845.7kB @ 423.2kB/s 0.1s
wrapt 62.0kB @ 29.7kB/s 0.1s
pyyaml 175.5kB @ 83.5kB/s 0.1s
cython 2.3MB @ 1.0MB/s 0.2s
loguru 126.6kB @ 56.1kB/s 0.2s
pydantic 1.6MB @ 676.0kB/s 0.2s
llvmlite 17.1MB @ 7.1MB/s 0.5s
pywavelets 3.6MB @ 1.4MB/s 0.3s
simpleitk 9.9MB @ 3.7MB/s 0.6s
vispy 1.7MB @ 603.3kB/s 0.2s
numba 5.7MB @ 2.0MB/s 0.7s
hdbscan 439.2kB @ 148.3kB/s 0.1s
referencing 39.0kB @ 13.0kB/s 0.1s
terminado 22.9kB @ 7.5kB/s 0.1s
deprecated 14.0kB @ 4.6kB/s 0.1s
scipy 14.9MB @ 4.8MB/s 0.7s
matplotlib-base 7.7MB @ 2.5MB/s 0.4s
argon2-cffi 18.6kB @ 5.9kB/s 0.0s
ipycanvas 153.7kB @ 48.7kB/s 0.1s
transforms3d 2.7MB @ 855.2kB/s 0.1s
jupyter_client 99.4kB @ 31.4kB/s 0.1s
jsonschema-specifications 16.4kB @ 5.2kB/s 0.0s
qtconsole-base 100.2kB @ 31.0kB/s 0.1s
czifile 18.4kB @ 5.7kB/s 0.1s
pyconify 22.7kB @ 6.9kB/s 0.1s
magicgui 95.4kB @ 28.9kB/s 0.1s
jsonschema-with-format-nongpl 7.3kB @ 2.2kB/s 0.1s
jupytext 102.9kB @ 30.8kB/s 0.1s
jupyter_server 243.7kB @ 72.8kB/s 0.0s
jupyterlab_server 48.9kB @ 14.5kB/s 0.1s
napari-svg 17.2kB @ 5.0kB/s 0.3s
seaborn 6.9kB @ 2.0kB/s 0.1s
jupyterlab 5.3MB @ 1.5MB/s 0.2s
mkl 144.7MB @ 40.6MB/s 2.8s
nbclassic 5.9MB @ 1.7MB/s 0.2s
napari-tools-menu 12.9kB @ 3.6kB/s 0.1s
napari-czifile2 9.8kB @ 2.7kB/s 0.1s
platymatch 31.1kB @ 8.5kB/s 0.1s
napari-time-slicer 15.5kB @ 4.2kB/s 0.1s
napari-plugin-search 9.5kB @ 2.6kB/s 0.0s
napari-crop 17.7kB @ 4.8kB/s 0.1s
napari 1.9MB @ 513.5kB/s 0.2s
napari-assistant 285.3kB @ 75.9kB/s 0.1s
scikit-image 10.3MB @ 2.7MB/s 0.4s
napari-pyclesperanto-assistant 237.6kB @ 62.3kB/s 0.1s
libzopfli 208.0kB @ 54.4kB/s 0.1s
libbrotlicommon 72.5kB @ 18.7kB/s 0.0s
zlib-ng 90.8kB @ 23.4kB/s 0.1s
openh264 410.8kB @ 105.5kB/s 0.1s
napari-curtain 8.9kB @ 2.3kB/s 0.2s
pthreads-win32 144.3kB @ 36.8kB/s 0.0s
napari-plot-profile 14.7kB @ 3.8kB/s 0.2s
libdeflate 74.9kB @ 19.0kB/s 0.1s
libvorbis 273.7kB @ 69.2kB/s 0.1s
brotli-bin 22.5kB @ 5.6kB/s 0.1s
libtiff 806.3kB @ 201.1kB/s 0.1s
openjpeg 262.5kB @ 65.4kB/s 0.1s
glib-tools 144.8kB @ 36.1kB/s 0.1s
types-python-dateutil 21.9kB @ 5.4kB/s 0.0s
fonts-conda-ecosystem 3.7kB @ 902.0 B/s 0.0s
font-ttf-dejavu-sans-mono 397.4kB @ 97.7kB/s 0.1s
gettext 5.6MB @ 1.4MB/s 0.2s
soupsieve 36.8kB @ 9.0kB/s 0.0s
executing 27.7kB @ 6.7kB/s 0.1s
python-json-logger 13.4kB @ 3.2kB/s 0.0s
pkgutil-resolve-name 10.8kB @ 2.6kB/s 0.1s
entrypoints 9.2kB @ 2.2kB/s 0.1s
nest-asyncio 11.6kB @ 2.8kB/s 0.1s
traitlets 110.3kB @ 26.4kB/s 0.0s
widgetsnbextension 886.0kB @ 209.6kB/s 0.1s
sphinxcontrib-devhelp 23.0kB @ 5.4kB/s 0.1s
alabaster 18.4kB @ 4.3kB/s 0.1s
libitk 4.2MB @ 989.8kB/s 0.3s
docstring_parser 30.0kB @ 7.0kB/s 0.1s
toolz 49.1kB @ 11.5kB/s 0.0s
exceptiongroup 20.6kB @ 4.8kB/s 0.0s
iniconfig 11.1kB @ 2.6kB/s 0.0s
pyparsing 89.5kB @ 20.9kB/s 0.0s
ply 44.8kB @ 10.4kB/s 0.1s
toml 18.4kB @ 4.3kB/s 0.0s
beautifulsoup4 115.0kB @ 26.6kB/s 0.1s
rfc3339-validator 8.1kB @ 1.9kB/s 0.0s
markdown-it-py 64.4kB @ 14.9kB/s 0.1s
anyio 96.7kB @ 22.1kB/s 0.1s
rich 184.1kB @ 42.0kB/s 0.1s
pint 237.3kB @ 54.1kB/s 0.1s
napari-plugin-engine 29.2kB @ 6.7kB/s 0.1s
pytest 244.6kB @ 55.7kB/s 0.1s
isoduration 17.2kB @ 3.9kB/s 0.1s
y-py 469.3kB @ 105.7kB/s 0.1s
cytoolz 321.4kB @ 71.5kB/s 0.1s
docutils 954.5kB @ 211.8kB/s 0.1s
jupyter_core 112.2kB @ 24.6kB/s 0.1s
debugpy 3.9MB @ 844.9kB/s 0.2s
contourpy 206.1kB @ 44.9kB/s 0.1s
numpy 6.2MB @ 1.3MB/s 0.3s
pyqt5-sip 79.7kB @ 17.0kB/s 0.1s
pandas 13.8MB @ 2.8MB/s 0.3s
jupyter_ydoc 79.5kB @ 16.2kB/s 0.2s
dask-core 870.8kB @ 175.8kB/s 0.1s
zarr 157.9kB @ 31.8kB/s 0.1s
psygnal 56.1kB @ 11.3kB/s 0.3s
pynndescent 48.8kB @ 9.8kB/s 0.0s
app-model 53.3kB @ 10.6kB/s 0.0s
pooch 52.4kB @ 10.4kB/s 0.0s
napari-console 13.7kB @ 2.7kB/s 0.0s
numpydoc 47.1kB @ 9.3kB/s 0.1s
nbconvert-core 187.6kB @ 36.9kB/s 0.1s
notebook 306.7kB @ 59.5kB/s 0.1s
jupyter_server_fileid 20.4kB @ 3.9kB/s 0.1s
stackview 28.5kB @ 5.5kB/s 0.1s
napari-workflows 20.0kB @ 3.8kB/s 0.1s
napari-animation 30.3kB @ 5.7kB/s 0.1s
napari-workflow-inspector 12.0kB @ 2.2kB/s 0.1s
napari-brightness-contrast 12.6kB @ 2.3kB/s 0.1s
pillow 47.7MB @ 8.7MB/s 1.1s
napari-clusters-plotter 92.8kB @ 16.9kB/s 0.1s
napari-folder-browser 9.6kB @ 1.8kB/s 0.1s
statsmodels 11.8MB @ 2.1MB/s 0.4s
napari-segment-blobs-and-things-with-membranes 18.4kB @ 3.3kB/s 0.1s
eigen 1.1MB @ 195.2kB/s 0.1s
libaec 33.6kB @ 6.0kB/s 0.0s
x264 1.0MB @ 185.4kB/s 0.1s
libbrotlidec 32.4kB @ 5.8kB/s 0.0s
fontconfig 190.1kB @ 33.5kB/s 0.0s
pcre2 880.8kB @ 153.8kB/s 0.1s
font-ttf-ubuntu 1.6MB @ 277.0kB/s 0.1s
libblas 5.0MB @ 848.6kB/s 0.2s
aom 12.3MB @ 2.1MB/s 0.4s
sniffio 14.4kB @ 2.4kB/s 0.0s
json5 25.0kB @ 4.2kB/s 0.1s
webcolors 18.2kB @ 3.0kB/s 0.1s
mdurl 14.7kB @ 2.4kB/s 0.1s
defusedxml 24.1kB @ 4.0kB/s 0.1s
sphinxcontrib-qthelp 25.7kB @ 4.3kB/s 0.0s
sphinxcontrib-serializinghtml 27.7kB @ 4.6kB/s 0.0s
asciitree 6.2kB @ 1.0kB/s 0.1s
funcsigs 14.4kB @ 2.4kB/s 0.1s
pytz 187.5kB @ 30.7kB/s 0.1s
threadpoolctl 21.0kB @ 3.4kB/s 0.1s
cached-property 4.1kB @ 671.0 B/s 0.1s
heapdict 7.0kB @ 1.1kB/s 0.1s
jedi 841.3kB @ 136.5kB/s 0.1s
prompt_toolkit 6.8kB @ 1.1kB/s 0.0s
qtpy 61.8kB @ 9.9kB/s 0.1s
pyproject_hooks 13.9kB @ 2.2kB/s 0.1s
ipython 590.8kB @ 94.3kB/s 0.1s
rpds-py 206.9kB @ 33.0kB/s 0.1s
cffi 297.0kB @ 47.0kB/s 0.1s
pytomlpp 184.7kB @ 29.0kB/s 0.1s
libglib 2.6MB @ 410.9kB/s 0.8s
numcodecs 486.9kB @ 76.2kB/s 0.1s
pywin32 6.1MB @ 953.8kB/s 0.2s
ypy-websocket 17.3kB @ 2.7kB/s 0.1s
patsy 187.2kB @ 29.0kB/s 0.0s
pydantic-compat 17.3kB @ 2.7kB/s 0.1s
qt-main 60.4MB @ 9.3MB/s 1.9s
reikna 96.6kB @ 14.8kB/s 0.1s
superqt 72.4kB @ 11.0kB/s 0.1s
imagecodecs 1.6MB @ 242.2kB/s 0.2s
sphinx 1.6MB @ 250.3kB/s 0.1s
nbclient 64.9kB @ 9.9kB/s 0.0s
jupyter 8.6kB @ 1.3kB/s 0.0s
jupyter_server_ydoc 15.5kB @ 2.3kB/s 0.1s
notebook-shim 16.8kB @ 2.5kB/s 0.1s
apoc-backend 24.4kB @ 3.7kB/s 0.1s
napari-workflow-optimizer 18.5kB @ 2.8kB/s 0.1s
libsodium 713.4kB @ 106.5kB/s 0.1s
napari-mouse-controls 32.2kB @ 4.8kB/s 0.1s
khronos-opencl-icd-loader 86.3kB @ 12.7kB/s 0.1s
libogg 35.2kB @ 5.2kB/s 0.1s
blosc 50.1kB @ 7.3kB/s 0.1s
napari-skimage-regionprops 32.6kB @ 4.8kB/s 0.2s
font-ttf-source-code-pro 700.8kB @ 101.8kB/s 0.1s
wcwidth 32.7kB @ 4.8kB/s 0.1s
decorator 12.1kB @ 1.7kB/s 0.1s
libavif 1.8MB @ 259.5kB/s 0.2s
uri-template 24.0kB @ 3.5kB/s 0.1s
shellingham 14.6kB @ 2.1kB/s 0.0s
pyperclip 14.5kB @ 2.1kB/s 0.1s
pycodestyle 34.3kB @ 4.9kB/s 0.1s
python-tzdata 146.0kB @ 20.8kB/s 0.1s
hdf5 11.7MB @ 1.7MB/s 0.2s
freetype-py 62.4kB @ 8.8kB/s 0.1s
click 85.1kB @ 12.0kB/s 0.1s
mdit-py-plugins 41.2kB @ 5.8kB/s 0.0s
python-build 22.0kB @ 3.1kB/s 0.0s
ipyevents 73.5kB @ 10.3kB/s 0.1s
psutil 520.1kB @ 72.7kB/s 0.1s
imagecodecs-lite 141.2kB @ 19.6kB/s 0.1s
fonttools 2.4MB @ 334.6kB/s 0.1s
gst-plugins-base 2.1MB @ 284.3kB/s 0.1s
babel 7.6MB @ 1.1MB/s 0.2s
tifffile 163.4kB @ 22.5kB/s 0.0s
mako 66.7kB @ 9.2kB/s 0.1s
scikit-learn 8.3MB @ 1.1MB/s 0.9s
ipykernel 116.7kB @ 16.0kB/s 0.0s
nbformat 100.4kB @ 13.8kB/s 0.0s
nbconvert 8.4kB @ 1.1kB/s 0.1s
napari-pystackreg 22.1kB @ 3.0kB/s 0.1s
the-segmentation-game 15.7kB @ 2.1kB/s 0.1s
yaml 63.3kB @ 8.6kB/s 0.1s
napari-layer-details-display 11.2kB @ 1.5kB/s 0.1s
jxrlib 355.3kB @ 48.0kB/s 0.1s
libxcb 1.3MB @ 179.8kB/s 0.1s
libxml2 1.8MB @ 235.1kB/s 0.1s
lcms2 1.0MB @ 135.7kB/s 0.1s
pickleshare 9.3kB @ 1.3kB/s 0.0s
ipython_genutils 21.6kB @ 2.9kB/s 0.0s
cloudpickle 24.7kB @ 3.3kB/s 0.0s
tomli 15.9kB @ 2.1kB/s 0.1s
imagesize 10.2kB @ 1.4kB/s 0.1s
asttokens 28.9kB @ 3.8kB/s 0.0s
autopep8 45.7kB @ 6.1kB/s 0.0s
pyopencl 704.9kB @ 93.5kB/s 0.3s
markupsafe 29.5kB @ 3.9kB/s 0.1s
argon2-cffi-bindings 34.7kB @ 4.6kB/s 0.0s
pywinpty 220.5kB @ 29.0kB/s 0.1s
sip 595.1kB @ 78.2kB/s 0.1s
npe2 73.8kB @ 9.7kB/s 0.1s
jupyter_events 21.4kB @ 2.8kB/s 0.0s
redlionfish 41.6kB @ 5.4kB/s 0.1s
napari-3d-ortho-viewer 17.0kB @ 2.2kB/s 0.1s
pyqtgraph 686.1kB @ 89.3kB/s 0.1s
napari-accelerated-pixel-and-object-classification 29.4kB @ 3.8kB/s 0.1s
svt-av1 2.0MB @ 252.7kB/s 0.1s
aiofiles 17.7kB @ 2.3kB/s 0.1s
locket 8.2kB @ 1.1kB/s 0.0s
matplotlib-inline 12.3kB @ 1.6kB/s 0.1s
pygments 860.4kB @ 110.3kB/s 0.1s
cachey 9.4kB @ 1.2kB/s 0.1s
jsonpointer 34.7kB @ 4.4kB/s 0.1s
kiwisolver 55.8kB @ 7.1kB/s 0.1s
jsonschema 71.9kB @ 9.0kB/s 0.0s
seaborn-base 234.7kB @ 29.4kB/s 0.1s
pystackreg 70.1kB @ 8.8kB/s 0.2s
napari-roi 18.1kB @ 2.3kB/s 0.1s
napari-simpleitk-image-processing 20.2kB @ 2.5kB/s 0.1s
fftw 1.4MB @ 170.0kB/s 0.1s
python-fastjsonschema 225.2kB @ 27.7kB/s 0.1s
six 14.3kB @ 1.7kB/s 0.1s
python-dateutil 246.0kB @ 29.9kB/s 0.1s
icu 17.9MB @ 2.2MB/s 0.6s
liblapack 5.0MB @ 602.4kB/s 0.6s
pyzmq 545.7kB @ 65.9kB/s 0.1s
jupyter_console 26.5kB @ 3.2kB/s 0.1s
pyclesperanto-prototype 221.4kB @ 26.6kB/s 0.1s
devbio-napari 14.4kB @ 1.7kB/s 0.1s
libcurl 313.3kB @ 37.4kB/s 0.1s
glib 506.9kB @ 60.1kB/s 0.1s
imageio 291.1kB @ 34.3kB/s 0.1s
sphinxcontrib-applehelp 29.5kB @ 3.5kB/s 0.2s
python 18.2MB @ 2.1MB/s 0.5s
jupyterlab_pygments 18.7kB @ 2.2kB/s 0.2s
libclang 147.9kB @ 17.3kB/s 0.1s
fsspec 126.9kB @ 14.8kB/s 0.1s
napari-blob-detection 12.2kB @ 1.4kB/s 0.1s
nbconvert-pandoc 7.4kB @ 865.0 B/s 0.0s
aiosqlite 19.2kB @ 2.2kB/s 0.1s
snappy 57.1kB @ 6.6kB/s 0.0s
lazy_loader 14.3kB @ 1.7kB/s 0.0s
send2trash 23.3kB @ 2.7kB/s 0.0s
stack_data 26.2kB @ 3.0kB/s 0.0s
pyqt 3.9MB @ 450.9kB/s 0.4s
websocket-client 46.6kB @ 5.4kB/s 0.0s
umap-learn 190.8kB @ 22.0kB/s 0.1s
sphinxcontrib-jsmath 10.4kB @ 1.2kB/s 0.0s
napari-tabu 10.1kB @ 1.2kB/s 0.1s
gstreamer 1.9MB @ 222.0kB/s 0.1s

Downloading and Extracting Packages:

Preparing transaction: done
Verifying transaction: done
Executing transaction: done

To activate this environment, use

 $ mamba activate devbio-napari-env

To deactivate an active environment, use

 $ mamba deactivate
note, I am on windows 11 I just freshly installed mambaforge 23.11.0

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@thawn @haesleinhuepf