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I want to apply the plugin on a 3D timelapse dataset (Platynereis dumerilii from Ozpolat, B. et al licensed by CC BY 4.0). As output I got the Tracks layer but the visualization was missing and I neither got the track_id_image nor the related properties.
What I did in Detail:
File → Open Folder... → open data which is saved as single timepoints in a folder
File Format according to napari-layer-details-display: [35,103,256,256] which corresponds to [t,z,y,x]
Short update: I do not encounter this Issue when I merge the timepoints into one tif-file before opening it in napari :) . So it seems to be related to opening from a folder of timepoints.
I want to apply the plugin on a 3D timelapse dataset (Platynereis dumerilii from Ozpolat, B. et al licensed by CC BY 4.0). As output I got the Tracks layer but the visualization was missing and I neither got the track_id_image nor the related properties.
What I did in Detail:
File
→Open Folder...
→ open data which is saved as single timepoints in a folderFile Format according to
napari-layer-details-display
: [35,103,256,256] which corresponds to [t,z,y,x]Tools
→Segmentation/labeling
→Voronoi-otsu-labeling(clesperanto)
Tools
→Tracking
→Track labeled objects (centroid-based, LapTrack)
During the process was running, I got this output:
followed by this error message:
And it looked like this. The Tracks layer was not visualized:
(dataset: Platynereis dumerilii from Ozpolat, B. et al licensed by CC BY 4.0)
But in the layer list it seemed like there should be an output:
Best,
Mara
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