verison of R?

[mooreann]

Hi! What version of R did you guys use to write the snakemake scripts? I keep getting weird dependency issues for packages that don't seem to install on some versions of R (ie rgeos, rgdal) when I run the snakemake script. Thanks!

[shafiqnoa]

hi @mooreann did you solve it. I am having similar issue. it would be great if you can share your solution.

[mooreann]

Yes! I was able to

1. install terra via mamba install -c conda-forge r-terra, which allowed me to then

2. install.packages("raster") in R

3. rgeos has been archived, but was able to install it manually in R via

packageurl <- "https://cran.r-project.org/src/contrib/Archive/rgeos/rgeos_0.6-4.tar.gz"
install.packages(packageurl, repos=NULL, type="source")

[shafiqnoa]

Thank you very much for your reply. I am still encountering an error with rgeos. May I ask which version of R you used for this?