Mismatch dapg finemapping sqtl intron to GTEx v8 EUR association files

[xinyixinyijiang]

Hello,

I downloaded the dap-g fine-mapping result from zenodo, trying to do some colocalization. But when I match the intron id to GTEx v8 EUR associations file downloaded from GTExv8 portal. I found that some introns can't find a match intron and geneid.

For example,
chr17:61393747:61399037 | Stomach
chr9:134026090:134028826 | Testis
chr9:134026549:134028826 | Testis
chr8:94975983:94980859 | Ovary
chr11:770398:771333 | Small_Intestine_Terminal_Ileum
can be founded in your fine-mapping result but can't be found in GTExv8 EUR associations file.

I tried to match with GTExv8 all participants association file and found that all introns can be well matched.

Considering you mentioned you used European participants only, I wondered whether you didn't use GTEx v8's EUR sQTL association file but made by yourselves?

Could you please tell me which association file you used?

Thank you very much!