use logger instead of logging

openvax · Jul 18, 2017 · a969724 · a969724
1 parent dbef76e
commit a969724
Showing 1 changed file with 2 additions and 5 deletions.
diff --git a/mhctools/base_commandline_predictor.py b/mhctools/base_commandline_predictor.py
@@ -20,9 +20,7 @@
 
 from six import string_types
 from typechecks import require_string, require_integer, require_iterable_of
-from mhcnames import normalize_allele_name
-from mhcnames import AlleleParseError
-
+from mhcnames import normalize_allele_name, AlleleParseError
 
 from .base_predictor import BasePredictor
 from .unsupported_allele import UnsupportedAllele
@@ -34,7 +32,6 @@
 
 logger = logging.getLogger(__name__)
 
-
 class BaseCommandlinePredictor(BasePredictor):
     """
     Base class for MHC binding predictors that run a local external
@@ -218,7 +215,7 @@ def _determine_supported_alleles(command, supported_allele_flag):
                 raise ValueError("Unable to determine supported alleles")
             return supported_alleles
         except Exception as e:
-            logging.exception(e)
+            logger.exception(e)
             raise SystemError("Failed to run %s %s. Possibly an incorrect executable version?" % (
                 command,
                 supported_allele_flag))