Merge pull request #141 from hammerlab/contigs

Add Genome.contigs. Fixes #140.
openvax · Mar 29, 2016 · 327c7e7 · 327c7e7
2 parents e1c902e + 67a87ec
commit 327c7e7
Showing 1 changed file with 12 additions and 0 deletions.
diff --git a/pyensembl/genome.py b/pyensembl/genome.py
@@ -560,6 +560,18 @@ def locus_of_exon_id(self, exon_id):
         """
         return self.db.query_locus("exon_id", exon_id, feature="exon")
 
+    ###################################################
+    #
+    #                  Contigs
+    #
+    ###################################################
+    @memoize
+    def contigs(self):
+      """
+      Returns all contigs ("seqname") for all genes
+      """
+      return self.db.query_feature_values("seqname", "gene")
+
     ###################################################
     #
     #             Gene Info Objects