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Added NCBIM37 to list of references for mouse #146

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merged 6 commits into from
May 11, 2016
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iskandr
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@iskandr iskandr commented May 10, 2016

This change is Reviewable

reference_assemblies={
"GRCm38": (78, MAX_ENSEMBL_RELEASE)
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Can you walk me through the numbers, here?

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@iskandr iskandr May 10, 2016

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I just flipped through different release directories on the Ensembl FTP
server until I found the change-point from NCBIM37 to GRCm38 (which
happened after Ensembl 67).

@tavinathanson
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LGTM

@iskandr
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iskandr commented May 10, 2016

Watch out @tavinathanson, FASTA parser coming your way.

(I'm sorry: to you, to the Hammerlab, to humanity at large)

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Coverage Status

Coverage decreased (-0.06%) to 80.065% when pulling 700a210 on add-mm9-support into 22dd18c on master.

@tavinathanson
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After in-person code review LGTM 👍

@iskandr iskandr merged commit 8968b3d into master May 11, 2016
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Coverage Status

Coverage decreased (-0.06%) to 80.065% when pulling 2de2348 on add-mm9-support into 22dd18c on master.

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3 participants