match df columns to varcode field names

openvax · May 25, 2016 · 1421b59 · 1421b59
1 parent 922901d
commit 1421b59
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/varcode/effect_collection.py b/varcode/effect_collection.py
@@ -268,8 +268,8 @@ def to_dataframe(self):
         """Build a dataframe from the effect collection"""
         def row_from_effect(effect):
             row = {}
-            row['chr'] = effect.variant.contig
-            row['position'] = effect.variant.start
+            row['contig'] = effect.variant.contig
+            row['start'] = effect.variant.start
             row['ref'] = effect.variant.ref
             row['alt'] = effect.variant.alt
             row['gene_id'] = effect.gene_id