Merge pull request #192 from hammerlab/change-readme-image-links-to-html

changed Markdown image links to HTML

README.md

@@ -1,4 +1,7 @@
-[![PyPI](https://img.shields.io/pypi/v/varcode.svg?maxAge=2592000)]() [![Build Status](https://travis-ci.org/hammerlab/varcode.svg?branch=master)](https://travis-ci.org/hammerlab/varcode) [![Coverage Status](https://coveralls.io/repos/hammerlab/varcode/badge.svg?branch=master&service=github)](https://coveralls.io/github/hammerlab/varcode?branch=master) [![DOI](https://zenodo.org/badge/18834/hammerlab/varcode.svg)](https://zenodo.org/badge/latestdoi/18834/hammerlab/varcode)
+<a href="https://travis-ci.org/hammerlab/varcode"><img src="https://travis-ci.org/hammerlab/varcode.svg?branch=master" alt="Build Status"></a>
+<a href="https://coveralls.io/github/hammerlab/varcode?branch=master"><img src="https://coveralls.io/repos/hammerlab/varcode/badge.svg?branch=master&service=github" alt="Coverage Status"></a>
+<a href="https://zenodo.org/badge/latestdoi/18834/hammerlab/varcode"><img src="https://zenodo.org/badge/18834/hammerlab/varcode.svg" alt="DOI"></a>
+<a href="https://pypi.python.org/pypi/varcode/"><img src="https://img.shields.io/pypi/v/varcode.svg?maxAge=1000" alt="PyPI"></a>
 
 Varcode
 =======
@@ -22,7 +25,7 @@ pyensembl install --release 75 76
 ```
 
 This will eliminate a potential delay of several minutes required to install the relevant data
-when using the `varcode` for the first time.
+when using the Varcode for the first time.
 
 
 Example
@@ -87,7 +90,7 @@ Effect Types
 
 Effect type  | Description
 -----------: | :-----------
-*AlternateStartCodon* | Replace annotated start codon with alternative  start codon (*e.g.* `ATG>CAG`).
+*AlternateStartCodon* | Replace annotated start codon with alternative  start codon (*e.g.* "ATG>CAG").
 *ComplexSubstitution* | Insertion and deletion of multiple amino acids.
 *Deletion* | Coding mutation which causes deletion of amino acid(s).
 *ExonLoss* | Deletion of entire exon, significantly disrupts protein.

setup.py

@@ -53,6 +53,7 @@
         long_description=readme,
         url="https://github.com/hammerlab/varcode",
         author="Alex Rubinsteyn",
+	author_email="alex rubinsteyn at gmail's fine email service",
         license="http://www.apache.org/licenses/LICENSE-2.0.html",
         classifiers=[
             'Development Status :: 3 - Alpha',