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Error when using pip install rebound #427

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tbstein opened this issue Apr 15, 2020 · 3 comments
Closed

Error when using pip install rebound #427

tbstein opened this issue Apr 15, 2020 · 3 comments

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@tbstein
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tbstein commented Apr 15, 2020

Hello,
I tried to use
pip install rebound
on fedora 31 but I got this error message.

Thank you in advance.

ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-nr11xnhb/rebound/setup.py'"'"'; file='"'"'/tmp/pip-install-nr11xnhb/rebound/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-nu8bivzz/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/tobias/.local/include/python3.7m/rebound
cwd: /tmp/pip-install-nr11xnhb/rebound/
Complete output (123 lines):
fatal: not a git repository (or any parent up to mount point /)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/rebound
copying rebound/widget.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/units.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/tools.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/simulationarchive.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/simulation.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/plotting.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/particle.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/interruptible_pool.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/horizons.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/data.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/init.py -> build/lib.linux-x86_64-3.7/rebound
copying rebound/rebound.h -> build/lib.linux-x86_64-3.7/rebound
running build_ext
building 'librebound' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/src
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/rebound.c -o build/temp.linux-x86_64-3.7/src/rebound.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/integrator_ias15.c -o build/temp.linux-x86_64-3.7/src/integrator_ias15.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/integrator_whfast.c -o build/temp.linux-x86_64-3.7/src/integrator_whfast.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/integrator_whfast.c: In function ‘reb_integrator_whfast_init’:
src/integrator_whfast.c:773:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
773 | if (ri_whfast->allocated_N != N){
| ^~
src/integrator_whfast.c: In function ‘reb_integrator_whfast_part2’:
src/integrator_whfast.c:1056:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
1056 | if (ri_whfast->allocated_Ntemp != N){
| ^~
src/integrator_whfast.c:1070:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
1070 | for (unsigned int i=1;i<N;i++){
| ^
src/integrator_whfast.c:1082:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
1082 | for (unsigned int i=1;i<N;i++){
| ^
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/integrator_saba.c -o build/temp.linux-x86_64-3.7/src/integrator_saba.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/integrator_saba.c: In function ‘reb_saba_corrector_step’:
src/integrator_saba.c:155:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
155 | if (ri_whfast->allocated_Ntemp != N){
| ^~
src/integrator_saba.c:171:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
171 | for (unsigned int i=1;i<N;i++){
| ^
src/integrator_saba.c:183:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
183 | for (unsigned int i=1;i<N;i++){
| ^
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/integrator_mercurius.c -o build/temp.linux-x86_64-3.7/src/integrator_mercurius.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/integrator_mercurius.c: In function ‘reb_mercurius_encounter_step’:
src/integrator_mercurius.c:276:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
276 | for (unsigned int i=0; iN; i++){
| ^
src/integrator_mercurius.c:281:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
281 | if (r->N_active==-1 || iN_active){
| ^
src/integrator_mercurius.c: In function ‘reb_integrator_mercurius_part1’:
src/integrator_mercurius.c:359:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
359 | if (rim->dcrit_allocatedN<N){
| ^
src/integrator_mercurius.c:369:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
369 | if (rim->allocatedN<N){
| ^
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/integrator_eos.c -o build/temp.linux-x86_64-3.7/src/integrator_eos.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/integrator_eos.c: In function ‘reb_integrator_eos_drift_shell1’:
src/integrator_eos.c:359:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
359 | for (int i=0;i<N;i++){
| ^
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/integrator_leapfrog.c -o build/temp.linux-x86_64-3.7/src/integrator_leapfrog.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/integrator_janus.c -o build/temp.linux-x86_64-3.7/src/integrator_janus.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/integrator_janus.c: In function ‘reb_integrator_janus_synchronize’:
src/integrator_janus.c:259:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
259 | if (r->ri_janus.allocated_N==r->N){
| ^~
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/integrator_sei.c -o build/temp.linux-x86_64-3.7/src/integrator_sei.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/integrator.c -o build/temp.linux-x86_64-3.7/src/integrator.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/integrator.c: In function ‘reb_update_acceleration’:
src/integrator.c:183:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
183 | if(r->N>r->ri_mercurius.allocatedN_additionalforces){
| ^
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/gravity.c -o build/temp.linux-x86_64-3.7/src/gravity.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/boundary.c -o build/temp.linux-x86_64-3.7/src/boundary.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/display.c -o build/temp.linux-x86_64-3.7/src/display.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/display.c: In function ‘reb_display_copy_data’:
src/display.c:1083:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
1083 | if (r->N>data->allocated_N){
| ^
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/collision.c -o build/temp.linux-x86_64-3.7/src/collision.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/collision.c: In function ‘reb_collision_search’:
src/collision.c:188:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
188 | if (rmin2_ab>rsum*rsum) continue;
| ^~
src/collision.c:191:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
191 | if (r->collisions_allocatedN<=collisions_N){
| ^~
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/tools.c -o build/temp.linux-x86_64-3.7/src/tools.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/derivatives.c -o build/temp.linux-x86_64-3.7/src/derivatives.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/tree.c -o build/temp.linux-x86_64-3.7/src/tree.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/particle.c -o build/temp.linux-x86_64-3.7/src/particle.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/particle.c: In function ‘reb_remove’:
src/particle.c:227:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
227 | for (int i=0;iencounterN;i++){
| ^
src/particle.c:235:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
235 | if (indexencounterNactive){
| ^
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/binarydiff.c -o build/temp.linux-x86_64-3.7/src/binarydiff.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/output.c -o build/temp.linux-x86_64-3.7/src/output.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/input.c -o build/temp.linux-x86_64-3.7/src/input.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/simulationarchive.c -o build/temp.linux-x86_64-3.7/src/simulationarchive.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DLIBREBOUND -Isrc -I/usr/include/python3.7m -c src/transformations.c -o build/temp.linux-x86_64-3.7/src/transformations.o -fstrict-aliasing -O3 -std=c99 -Wno-unknown-pragmas -DGITHASH=d15889dce6327b47ace8111b0b376361aba81ff9 -DLIBREBOUND -D_GNU_SOURCE -fPIC
src/transformations.c: In function ‘reb_transformations_whds_to_inertial_posvel’:
src/transformations.c:301:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
301 | for (int i=1;i<N;i++){
| ^
gcc -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g build/temp.linux-x86_64-3.7/src/rebound.o build/temp.linux-x86_64-3.7/src/integrator_ias15.o build/temp.linux-x86_64-3.7/src/integrator_whfast.o build/temp.linux-x86_64-3.7/src/integrator_saba.o build/temp.linux-x86_64-3.7/src/integrator_mercurius.o build/temp.linux-x86_64-3.7/src/integrator_eos.o build/temp.linux-x86_64-3.7/src/integrator_leapfrog.o build/temp.linux-x86_64-3.7/src/integrator_janus.o build/temp.linux-x86_64-3.7/src/integrator_sei.o build/temp.linux-x86_64-3.7/src/integrator.o build/temp.linux-x86_64-3.7/src/gravity.o build/temp.linux-x86_64-3.7/src/boundary.o build/temp.linux-x86_64-3.7/src/display.o build/temp.linux-x86_64-3.7/src/collision.o build/temp.linux-x86_64-3.7/src/tools.o build/temp.linux-x86_64-3.7/src/derivatives.o build/temp.linux-x86_64-3.7/src/tree.o build/temp.linux-x86_64-3.7/src/particle.o build/temp.linux-x86_64-3.7/src/binarydiff.o build/temp.linux-x86_64-3.7/src/output.o build/temp.linux-x86_64-3.7/src/input.o build/temp.linux-x86_64-3.7/src/simulationarchive.o build/temp.linux-x86_64-3.7/src/transformations.o -L/usr/lib64 -lpython3.7m -o build/lib.linux-x86_64-3.7/librebound.cpython-37m-x86_64-linux-gnu.so
/usr/bin/ld: cannot find -lpython3.7m
collect2: error: ld returned 1 exit status
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-nr11xnhb/rebound/setup.py'"'"'; file='"'"'/tmp/pip-install-nr11xnhb/rebound/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-nu8bivzz/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/tobias/.local/include/python3.7m/rebound Check the logs for full command output.
@hannorein
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Hello Stranger,

I'm not sure this is a rebound problem. It looks like pip cannot find the python library to link against. Putting the error message in a search engine suggests you try installing the python-dev tools:

https://stackoverflow.com/questions/8400272/usr-bin-ld-cannot-find-lpython2-7

Hanno

@tbstein
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tbstein commented Apr 15, 2020

Hello Hanno,
thank you for telling me that this isn't a rebound problem. Sadly none of the proposed solutions in your link helped me. I'll try to look for other people having similar pip problems now. Thank you for helping.

Tobias

@hannorein
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Hi Tobias,

Ok. Again, it looks to me as if you need to install python dev tools and/or sort out some path issues on your system. I'll close this for now but if you think it's an issue with REBOUND after all, please feel free to reopen it!

Hanno

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