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checkFiles.py
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checkFiles.py
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#! /usr/bin/env python
# Authors: Yuta Takahashi & Izaak Neutelings (2018)
import os, glob, sys, shlex, re
#import time
from fnmatch import fnmatch
import subprocess
from argparse import ArgumentParser
import ROOT; ROOT.PyConfig.IgnoreCommandLineOptions = True
from ROOT import TFile, TTree, TH1, Double
class bcolors:
HEADER = '\033[95m'
OKBLUE = '\033[94m'
OKGREEN = '\033[92m'
WARNING = '\033[93m'
FAIL = '\033[91m'
ENDC = '\033[0m'
BOLD = '\033[1m'
UNDERLINE = '\033[4m'
if __name__ == '__main__':
description = '''Check if the job output files are valid, compare the number of events to DAS (-d), hadd them into one file per sample (-m), and merge datasets (-a).'''
parser = ArgumentParser(prog="checkFiles",description=description,epilog="Good luck!")
parser.add_argument('-y', '--year', dest='years', choices=[2016,2017,2018], type=int, nargs='+', default=[2017], action='store',
help="select year" )
parser.add_argument('-c', '--channel', dest='channels', choices=['mutau','eletau','tautau','mumu','elemu'], nargs='+', default=['tautau'], action='store' )
parser.add_argument('-m', '--make', dest='make', default=False, action='store_true',
help="hadd all output files" )
parser.add_argument('-a', '--hadd', dest='haddother', default=False, action='store_true',
help="hadd some samples into one (e.g. all data sets, or the extensions)" )
parser.add_argument('-d', '--das', dest='compareToDas', default=False, action='store_true',
help="compare number of events in output to das" )
parser.add_argument('-D', '--das-ex', dest='compareToDasExisting', default=False, action='store_true',
help="compare number of events in existing output to das" )
parser.add_argument('-C', '--check-ex', dest='checkExisting', default=False, action='store_true',
help="check existing output (e.g. 'LHE_Njets')" )
parser.add_argument('-f', '--force', dest='force', default=False, action='store_true',
help="overwrite existing hadd'ed files" )
parser.add_argument('-r', '--clean', dest='cleanup', default=False, action='store_true',
help="remove all output files after hadd" )
parser.add_argument('-R', '--rm-bad', dest='removeBadFiles', default=False, action='store_true',
help="remove files that are bad (zombies, no tree, no cutflow, ...)" )
parser.add_argument( '--rm-bug', dest='removeBuggedFiles', default=False, action='store_true',
help="remove files that have bad LHE_Njets" )
parser.add_argument('-o', '--outdir', dest='outdir', type=str, default=None, action='store' )
parser.add_argument('-s', '--sample', dest='samples', nargs='+', default=[ ], type=str, action='store',
help="samples to run over, glob patterns (wildcards * and ?) are allowed." )
parser.add_argument('-x', '--veto', dest='vetos', nargs='+', default=[ ], type=str, action='store',
help="exclude/veto this sample" )
parser.add_argument('-t', '--type', dest='type', choices=['data','mc'], type=str, default=None, action='store',
help="filter data or MC to submit" )
parser.add_argument('-l', '--tag', dest='intag', type=str, default="", action='store',
help="add a tag to the output file" )
parser.add_argument( '--outtag', dest='outtag', type=str, default="", action='store',
help="add a tag to the output file" )
parser.add_argument('-T', '--tes', dest='tes', type=float, default=1.0, action='store',
help="tau energy scale" )
parser.add_argument('-L', '--ltf', dest='ltf', type=float, default=1.0, action='store',
help="lepton to tau fake energy scale" )
parser.add_argument('-J', '--jtf', dest='jtf', type=float, default=1.0, action='store',
help="jet to tau fake energy scale" )
parser.add_argument('-M', '--Zmass', dest='Zmass', action='store_true', default=False,
help="use Z mass window for dimuon spectrum" )
parser.add_argument('-v', '--verbose', dest='verbose', default=False, action='store_true',
help="set verbose" )
args = parser.parse_args()
else:
args = None
subdirs = [ 'TT', 'DY', 'W*J', 'ST', 'LQ', 'Tau', 'SingleMuon', 'SingleElectron' ]
sample_dict = [
('DY', "DYJetsToLL_M-10to50", "DYJetsToLL_M-10to50_Tune*madgraph*pythia8" ),
('DY', "DYJetsToLL_M-10to50_nlo", "DYJetsToLL_M-10to50_Tune*amcatnlo*pythia8" ),
('DY', "DYJetsToLL_M-50_ext", "DYJetsToLL_M-50_Tune*madgraph*pythia8/*ext1" ), # ext before reg !
#('DY', "DYJetsToLL_M-50", "DYJetsToLL_M-50_Tune*madgraph*pythia8/RunIIAutumn18" ), # ext before reg !
('DY', "DYJetsToLL_M-50_reg", "DYJetsToLL_M-50_Tune*madgraph*pythia8" ),
('DY', "DY1JetsToLL_M-50_ext", "DY1JetsToLL_M-50_Tune*madgraph*pythia8/RunIIFall17*ext1" ),
('DY', "DY1JetsToLL_M-50_reg", "DY1JetsToLL_M-50_Tune*madgraph*pythia8/RunIIFall17" ),
('DY', "DY2JetsToLL_M-50_ext", "DY2JetsToLL_M-50*/RunIIFall17*ext1" ), # ext before reg !
('DY', "DY2JetsToLL_M-50_reg", "DY2JetsToLL_M-50*/RunIIFall17" ),
('DY', "DY3JetsToLL_M-50_ext", "DY3JetsToLL_M-50*/RunIIFall17*ext1" ), # ext before reg !
('DY', "DY3JetsToLL_M-50_reg", "DY3JetsToLL_M-50*/RunIIFall17" ),
('DY', "DY1JetsToLL_M-50", "DY1JetsToLL_M-50_Tune*madgraph*pythia8" ),
('DY', "DY2JetsToLL_M-50", "DY2JetsToLL_M-50_Tune*madgraph*pythia8" ),
('DY', "DY3JetsToLL_M-50", "DY3JetsToLL_M-50_Tune*madgraph*pythia8" ),
('DY', "DY4JetsToLL_M-50", "DY4JetsToLL_M-50_Tune*madgraph*pythia8" ),
('WJ', "WJetsToLNu_ext", "WJetsToLNu_Tune*madgraph*pythia8/*ext1" ), # ext before reg !
('WJ', "WJetsToLNu_ext", "WJetsToLNu_Tune*madgraph*pythia8/*ext2" ), # ext before reg !
('WJ', "WJetsToLNu_reg", "WJetsToLNu_Tune*madgraph*pythia8/RunIISummer16" ),
('WJ', "WJetsToLNu_reg", "WJetsToLNu_Tune*madgraph*pythia8/RunIIFall17" ),
('WJ', "WJetsToLNu", "WJetsToLNu_Tune*madgraph*pythia8" ),
('WJ', "W2JetsToLNu_ext", "W2JetsToLNu_Tune*madgraph*pythia8/RunIISummer16*ext" ), # ext before reg !
('WJ', "W2JetsToLNu_reg", "W2JetsToLNu_Tune*madgraph*pythia8/RunIISummer16" ),
('WJ', "W3JetsToLNu_ext", "W3JetsToLNu_Tune*madgraph*pythia8/RunIISummer16*ext" ), # ext before reg !
('WJ', "W3JetsToLNu_reg", "W3JetsToLNu_Tune*madgraph*pythia8/RunIISummer16" ),
('WJ', "W4JetsToLNu_ext1", "W4JetsToLNu_Tune*madgraph*pythia8/RunIISummer16*ext1" ), # ext before reg !
('WJ', "W4JetsToLNu_ext2", "W4JetsToLNu_Tune*madgraph*pythia8/RunIISummer16*ext2" ), # ext before reg !
('WJ', "W4JetsToLNu_reg", "W4JetsToLNu_Tune*madgraph*pythia8/RunIISummer16" ),
('WJ', "W1JetsToLNu", "W1JetsToLNu_Tune*madgraph*pythia8" ),
('WJ', "W2JetsToLNu", "W2JetsToLNu_Tune*madgraph*pythia8" ),
('WJ', "W3JetsToLNu", "W3JetsToLNu_Tune*madgraph*pythia8" ),
('WJ', "W4JetsToLNu", "W4JetsToLNu_Tune*madgraph*pythia8" ),
('ST', "ST_t-channel_antitop", "ST_t-channel_antitop_4f_inclusiveDecays" ),
('ST', "ST_t-channel_top", "ST_t-channel_top_4f_inclusiveDecays" ),
('ST', "ST_t-channel_top", "ST_t-channel_top_5f_TuneCP5" ),
('ST', "ST_t-channel_antitop", "ST_t-channel_antitop_4f_InclusiveDecays" ),
('ST', "ST_t-channel_top", "ST_t-channel_top_4f_InclusiveDecays" ),
('ST', "ST_tW_antitop", "ST_tW_antitop_5f_inclusiveDecays" ),
('ST', "ST_tW_top", "ST_tW_top_5f_inclusiveDecays" ),
('ST', "ST_s-channel", "ST_s-channel_4f_hadronicDecays" ),
#('TT', "TT_ext", "TT_Tune*powheg*pythia8/*ext" ),
('TT', "TT", "TT_Tune*powheg*pythia8" ),
('TT', "TTTo2L2Nu", "TTTo2L2Nu" ),
('TT', "TTToHadronic", "TTToHadronic" ),
('TT', "TTToSemiLeptonic", "TTToSemiLeptonic" ),
('VV', "WWTo1L1Nu2Q", "WWTo1L1Nu2Q_13TeV_amcatnloFXFX_madspin_pythia8" ),
('VV', "WWTo2L2Nu", "WWTo2L2Nu_NNPDF31_TuneCP5_PSweights_13TeV-powheg-pythia8" ),
('VV', "WWToLNuQQ_ext", "WWToLNuQQ_NNPDF31_TuneCP5_13TeV-powheg-pythia8/*ext" ), # ext before reg !
('VV', "WWToLNuQQ_reg", "WWToLNuQQ_NNPDF31_TuneCP5_13TeV-powheg-pythia8" ),
('VV', "WW", "WW_Tune*pythia8" ),
('VV', "WZ", "WZ_Tune*pythia8" ),
('VV', "ZZ", "ZZ_Tune*pythia8" ),
('Tau', "Tau_$RUN", "Tau/$RUN" ),
('Tau', "Tau_Run2017B", "Tau/ytakahas-NanoTest_20180507_B" ),
('Tau', "Tau_Run2017C", "Tau/ytakahas-NanoTest_20180507_C" ),
('Tau', "Tau_Run2017D", "Tau/ytakahas-NanoTest_20180507_D" ),
('Tau', "Tau_Run2017E", "Tau/ytakahas-NanoTest_20180507_E" ),
('Tau', "Tau_Run2017F", "Tau/ytakahas-NanoTest_20180507_F" ),
('Tau', "Tau_$RUN", "Tau/manzoni-$RUN" ),
('SingleMuon', "SingleMuon_$RUN", "SingleMuon/$RUN" ),
('SingleMuon', "SingleMuon_$RUN", "SingleMuon/manzoni-$RUN" ),
('SingleElectron', "SingleElectron_$RUN", "SingleElectron/$RUN" ),
('SingleElectron', "SingleElectron_Run2017B", "SingleElectron/ytakahas-Nano_SingleElectron_20180507_B" ),
('SingleElectron', "SingleElectron_Run2017C", "SingleElectron/ytakahas-Nano_SingleElectron_20180507_C" ),
('SingleElectron', "SingleElectron_Run2017D", "SingleElectron/ytakahas-Nano_SingleElectron_20180507_D" ),
('SingleElectron', "SingleElectron_Run2017E", "SingleElectron/ytakahas-Nano_SingleElectron_20180507_E" ),
('SingleElectron', "SingleElectron_Run2017F", "SingleElectron/ytakahas-Nano_SingleElectron_20180507_F" ),
('MuTauEmb', "Embedding_MuTau_$RUN", "Embedding$RUN" ),
('EGamma', "EGamma_$RUN", "EGamma/$RUN" ),
('LQ', "SLQ_pair_M$MASS", "LegacyRun2_*_LQ_Pair_5f_Madgraph_LO_M$MASS" ),
('LQ', "SLQ_single_M$MASS", "LegacyRun2_*_LQ_Single_5f_Madgraph_LO_M$MASS" ),
('LQ', "SLQ_nonres_M$MASS", "LegacyRun2_*_LQ_NonRes_5f_Madgraph_LO_M$MASS" ),
('LQ', "VLQ_nonres_M$MASS", "LegacyRun2_*_LQ_VecNonRes_5f_Madgraph_LO_M$MASS" ),
('LQ', "VLQ_pair_M$MASS", "PairVectorLQ_InclusiveDecay_M-$MASS" ),
('LQ', "VLQ_single_M$MASS", "SingleVectorLQ_InclusiveDecay_M-$MASS" ),
('LQ', "LQ3ToTauB_t-channel_M$MASS", "LQ3ToTauB_Fall2017_5f_Madgraph_LO_t-channel-M$MASS" ),
('LQ', "LQ3ToTauB_s-channel_M$MASS", "LQ3ToTauB_Fall2017_5f_Madgraph_LO_s-channel-M$MASS" ),
('LQ', "LQ3ToTauB_pair_M$MASS", "LQ3ToTauB_Fall2017_5f_Madgraph_LO_pair-M$MASS" ),
('LQ', "VectorLQ3ToTauB_s-channel_M$MASS", "VectorLQ3ToTauB_Fall2017_5f_Madgraph_LO_s_channel_M$MASS" ),
('LQ', "VectorLQ3ToTauB_pair_M$MASS", "VectorLQ3ToTauB_Fall2017_5f_Madgraph_LO_pair_M$MASS" ),
('VBF', "VBFHToTauTau_M$MASS", "VBFHToTauTau_M$MASS" ),
]
sample_dict = [(d,s,p.replace('*','.*').replace('$MASS','(\d+)').replace('$RUN','(Run201\d[A-H])')) for d,s,p in sample_dict] # convert to regex pattern
#sample_dict = { k: v.lstrip('/').replace('/','__') for k, v in sample_dict.iteritems() }
haddsets = [
('DY', "DYJetsToLL_M-50", [ 'DYJetsToLL_M-50_*' ], [2016,2017]),
('DY', "DY1JetsToLL_M-50", [ 'DY1JetsToLL_M-50_*' ], [2017]),
('DY', "DY2JetsToLL_M-50", [ 'DY2JetsToLL_M-50_*' ], [2017]),
('DY', "DY3JetsToLL_M-50", [ 'DY3JetsToLL_M-50_*' ], [2017]),
('WJ', "WJetsToLNu", [ 'WJetsToLNu_*' ], ),
('WJ', "W2JetsToLNu", [ 'W2JetsToLNu_*' ], [2016]),
('WJ', "W3JetsToLNu", [ 'W3JetsToLNu_*' ], [2016]),
('WJ', "W4JetsToLNu", [ 'W4JetsToLNu_*' ], [2016]),
('Tau', "Tau_$RUN", [ 'Tau_$RUN?' ], ),
('SingleMuon', "SingleMuon_$RUN", [ 'SingleMuon_$RUN?' ], ),
('SingleElectron', "SingleElectron_$RUN", [ 'SingleElectron_$RUN?' ], [2016,2017]),
('EGamma', "EGamma_$RUN", [ 'EGamma_$RUN?' ], [2018]),
]
def main(args):
#from checkJobs import getSubmittedJobs
years = args.years
channels = args.channels
intag = args.intag
outtag = args.outtag
tes = args.tes
ltf = args.ltf
jtf = args.jtf
Zmass = args.Zmass
#submitted = getSubmittedJobs()
if outtag and '_' not in outtag[0]: outtag = '_'+outtag
if tes!=1.: intag += "_TES%.3f"%(tes)
if ltf!=1.: intag += "_LTF%.3f"%(ltf)
if jtf!=1.: intag += "_JTF%.3f"%(jtf)
if Zmass: intag += "_Zmass"
intag = intag.replace('.','p')
outtag = intag+outtag
for year in years:
indir = "output_%s/"%(year)
samplesdir = args.outdir if args.outdir else "/scratch/ineuteli/analysis/LQ_%s"%(year)
os.chdir(indir)
# CHECK EXISTING
if args.checkExisting:
for channel in channels:
infiles = "%s/*/*_%s.root"%(channel)
filelist = glob.glob(infiles)
pattern = infiles.split('/')[-1]
for file in filelist:
if not isValidSample(pattern): continue
checkFiles(file,pattern,tag=intag)
continue
# GET LIST
samplelist = [ ]
for directory in sorted(os.listdir('./')):
if not os.path.isdir(directory): continue
if not isValidSample(directory): continue
samplelist.append(directory)
if not samplelist:
print "No samples found in %s!"%(indir)
if args.verbose:
print 'samplelist = %s\n'%(samplelist)
# CHECK samples
for channel in channels:
print header(year,channel,intag)
# HADD samples
if not args.haddother or args.make:
for directory in samplelist:
if args.verbose:
print directory
subdir, samplename = getSampleShortName(directory)
outdir = "%s/%s"%(samplesdir,subdir)
outfile = "%s/%s_%s%s.root"%(outdir,samplename,channel,outtag)
infiles = '%s/*_%s%s.root'%(directory,channel,intag)
if args.verbose:
print "directory = %s"%(directory)
print "outdir = %s"%(outdir)
print "outfile = %s"%(outfile)
print "infiles = %s"%(infiles)
#if directory.find('W4JetsToLNu_TuneCP5_13TeV-madgraphMLM-pythia8__ytakahas-NanoTest_20180507_W4JetsToLNu_TuneCP5_13TeV-madgraphMLM-pythia8-a7a5b67d3e3590e4899e147be08660be__USER')==-1: continue
filelist = sorted(glob.glob(infiles),key=naturalSort)
if not filelist: continue
#running = [f for f in filelist if any(j.outfile in f for j in submitted)]
if checkFiles(filelist,directory,clean=args.removeBadFiles,force=args.force,cleanBug=args.removeBuggedFiles,tag=intag):
print bcolors.BOLD + bcolors.OKGREEN + '[OK] ' + directory + ' ... can be hadded ' + bcolors.ENDC
if not any(s in directory for s in ['LQ3','LQ_']):
if args.compareToDas:
compareEventsToDAS(filelist,directory)
if args.compareToDasExisting and os.path.isfile(outfile):
print ' check existing file %s:'%(outfile)
compareEventsToDAS(outfile,directory)
#else:
# print bcolors.BOLD + bcolors.OKBLUE + ' [OK] ' + directory + bcolors.ENDC
#print
# HADD
if args.make:
ensureDirectory(outdir)
if os.path.isfile(outfile):
if args.force:
print bcolors.BOLD + bcolors.WARNING + " [WN] target %s already exists! Overwriting..."%(outfile) + bcolors.ENDC
else:
print bcolors.BOLD + bcolors.FAIL + " [NG] target %s already exists! Use --force or -f to overwrite."%(outfile) + bcolors.ENDC
continue
haddcmd = 'hadd -f %s %s'%(outfile,infiles)
print haddcmd
os.system(haddcmd)
if not any(s in directory for s in ['LQ3','LQ_']):
compareEventsToDAS(outfile,directory)
# skimcmd = 'python extractTrees.py -c %s -f %s'%(channel,outfile)
# rmcmd = 'rm %s'%(infiles)
# #os.system(skimcmd)
# #os.system(rmcmd)
# continue
#skimcmd = 'python extractTrees.py -c %s -f %s'%(channel,outfile)
#os.system(skimcmd)
# CLEAN UP
if args.cleanup:
rmcmd = 'rm %s; rm %s/logs/*_%s_%s%s*'%(infiles,directory,channel,year,intag)
print bcolors.BOLD + bcolors.OKBLUE + " removing %d output files..."%(len(infiles)) + bcolors.ENDC
if args.verbose:
print rmcmd
os.system(rmcmd)
print
# HADD other
if args.haddother:
for haddset in haddsets:
subdir, samplename, sampleset = haddset[:3]
haddyear = haddset[4] if len(haddset)>=4 else [ ]
if args.verbose:
print subdir, samplename, sampleset
if args.samples and not matchSampleToPattern(samplename,args.samples): continue
if args.vetos and matchSampleToPattern(directory,args.vetos): continue
if 'SingleMuon' in subdir and channel not in ['mutau','mumu','elemu']: continue
if ('SingleElectron' in subdir or 'EGamma' in subdir) and channel!='eletau': continue
if 'Tau' in subdir and channel!='tautau': continue
if 'LQ3' in subdir and channel not in ['mutau','tautau','eletau']: continue
if '2017' in samplename and year!=2017: continue
if '2018' in samplename and year!=2018: continue
if haddyear and year not in haddyear: continue
if '$RUN' in samplename:
samplename = samplename.replace('$RUN','Run%d'%year)
sampleset = [s.replace('$RUN','Run%d'%year) for s in sampleset]
outdir = "%s/%s"%(samplesdir,subdir)
outfile = "%s/%s_%s%s.root"%(outdir,samplename,channel,outtag)
infiles = ['%s/%s_%s%s.root'%(outdir,s,channel,outtag) for s in sampleset] #.replace('ele','e')
ensureDirectory(outdir)
# OVERWRITE ?
if os.path.isfile(outfile):
if args.force:
pass
#if args.verbose:
# print bcolors.BOLD + bcolors.WARNING + "[WN] target %s already exists! Overwriting..."%(outfile) + bcolors.ENDC
else:
print bcolors.BOLD + bcolors.FAIL + "[NG] target %s already exists! Use --force or -f to overwrite."%(outfile) + bcolors.ENDC
continue
# CHECK FILES
allinfiles = [ ]
for infile in infiles[:]:
if '*' in infile or '?' in infile:
files = glob.glob(infile)
allinfiles += files
if not files:
print bcolors.BOLD + bcolors.FAIL + '[NG] no match for the glob pattern %s! Removing pattern from hadd list for "%s"...'%(infile,samplename) + bcolors.ENDC
infiles.remove(infile)
elif not os.path.isfile(infile):
print bcolors.BOLD + bcolors.FAIL + '[NG] infile %s does not exists! Removing from hadd list for "%s"...'%(infile,samplename) + bcolors.ENDC
infiles.remove(infile)
else:
allinfiles.append(infile)
# HADD
if args.verbose:
print "infiles =", infiles
print "allfiles =", allinfiles
if len(allinfiles)==1:
print bcolors.BOLD + bcolors.WARNING + "[WN] found only one file (%s) to hadd to %s!"%(allinfiles[0],outfile) + bcolors.ENDC
elif len(allinfiles)>1:
print bcolors.BOLD + bcolors.OKGREEN + '[OK] hadding %s' %(outfile) + bcolors.ENDC
haddcmd = 'hadd -f %s %s'%(outfile,' '.join(infiles))
print haddcmd
os.system(haddcmd)
else:
print bcolors.BOLD + bcolors.WARNING + "[WN] no files to hadd!" + bcolors.ENDC
print
os.chdir('..')
def isValidSample(pattern):
if args.samples and not matchSampleToPattern(pattern,args.samples): return False
if args.vetos and matchSampleToPattern(pattern,args.vetos): return False
if args.type=='mc' and any(s in pattern[:len(s)+2] for s in ['SingleMuon','SingleElectron','Tau','EGamma']): return False
if args.type=='data' and not any(s in pattern[:len(s)+2] for s in ['SingleMuon','SingleElectron','Tau','EGamma']): return False
return True
def checkFiles(filelist,directory,clean=False,force=False,cleanBug=False,treename='tree',tag=""):
"""Check if the file is valid."""
if args.verbose:
print "checkFiles: %s, %s"%(filelist,directory)
if isinstance(filelist,str):
filelist = [filelist]
badfiles = [ ]
bugfiles = [ ]
ifound = [ ]
nfiles = len(filelist)
#total_processed = 0
indexpattern = re.compile(r".*_(\d+)_[a-z]+%s\.root"%tag) #(?:_[A-Z]+\dp\d+)?(?:_Zmass)?
for filename in filelist:
match = indexpattern.search(filename)
if match: ifound.append(int(match.group(1)))
file = TFile.Open(filename, 'READ')
isbad = False
if file==None:
print bcolors.FAIL + '[NG] file %s is None'%(filename) + bcolors.ENDC
badfiles.append(filename)
continue
elif file.IsZombie():
print bcolors.FAIL + '[NG] file %s is a zombie'%(filename) + bcolors.ENDC
badfiles.append(filename)
else:
tree = file.Get(treename)
if not isinstance(tree,TTree):
print bcolors.FAIL + '[NG] no tree found in ' + filename + bcolors.ENDC
badfiles.append(filename)
elif not isinstance(file.Get('cutflow'),TH1):
print bcolors.FAIL + '[NG] no cutflow found in ' + filename + bcolors.ENDC
badfiles.append(filename)
elif any(s in filename for s in ['DYJets','WJets']) and tree.GetMaximum('LHE_Njets')>10:
print bcolors.BOLD + bcolors.WARNING + '[WN] %d/%d events have LHE_Njets = %d > 10 in %s'%(tree.GetEntries(),tree.GetEntries("LHE_Njets>10"),tree.GetMaximum('LHE_Njets'),filename) + bcolors.ENDC
bugfiles.append(filename)
#if isinstance(tree,TTree):
# total_processed += tree.GetEntries()
file.Close()
if len(badfiles)>0:
print bcolors.BOLD + bcolors.FAIL + "[NG] %s: %d out of %d files %s no tree or cutflow!"%(directory,len(badfiles),len(filelist),"have" if len(badfiles)>1 else "has") + bcolors.ENDC
for cleanlist, cleanflag in [(badfiles,clean),(bugfiles,cleanBug)]:
if len(cleanlist)>0 and cleanflag:
if force:
print bcolors.WARNING + ' [WN] removing bad files:'
for filename in cleanlist:
print " %s"%filename
print bcolors.ENDC
for filename in cleanlist:
os.system("rm %s"%filename)
filelist.remove(filename)
else:
print "\n Bad files:"
for filename in cleanlist:
print " %s"%filename
remove = raw_input(" Do you really want to remove these? [y/n] ")
if remove.lower()=='force':
remove = 'y'
force = True
if remove.lower()=='quit':
exit(0)
if remove.lower()=='y':
for filename in cleanlist:
print "removing %s..."%filename
os.system("rm %s"%filename)
filelist.remove(filename)
print
# TODO: check all chunks (those>imax)
if ifound:
imax = max(ifound)+1
if nfiles<imax:
imiss = [ i for i in range(0,max(ifound)) if i not in ifound ]
chunktext = ('chunks ' if len(imiss)>1 else 'chunk ') + ', '.join(str(i) for i in imiss)
print bcolors.BOLD + bcolors.WARNING + "[WN] %s missing %d/%d files (%s) ?"%(directory,len(imiss),nfiles,chunktext) + bcolors.ENDC
return False
else:
print bcolors.BOLD + bcolors.WARNING + "[WN] %s did not find any valid chunk pattern in file list ?"%(directory) + bcolors.ENDC
return len(badfiles)==0
def compareEventsToDAS(inputarg,dasname,histname='cutflow',treename=""):
"""Compare a number of processed events in an output file to the available number of events in DAS."""
dasname = dasname.replace('__', '/')
if dasname[0]!='/': dasname = '/'+dasname
if args.verbose:
print "compareEventsToDAS: %s, %s"%(inputarg,dasname)
#start = time.time()
# COUNT EVENTS
nfiles = ""
total_processed = 0
if isinstance(inputarg,list) or isinstance(inputarg,str):
filenames = inputarg
if isinstance(filenames,str):
filenames = [filenames]
nfiles = len(filenames)
for filename in filenames:
file = TFile.Open(filename, 'READ')
events_processed = 0
if file==None:
continue
elif file.IsZombie():
file.Close()
continue
elif treename:
tree = file.Get(treename)
if tree: events_processed = tree.GetEntries()
else:
hist = file.Get(histname)
if hist: events_processed = hist.GetBinContent(1)
if args.verbose:
print "%12d events processed in %s "%(events_processed,filename)
total_processed += events_processed
file.Close()
nfiles = ", %d files"%(nfiles) if nfiles>1 else ""
elif isinstance(inputarg,long) or isinstance(inputarg,int) or isinstance(inputarg,float):
total_processed = inputarg
else:
print bcolors.BOLD + bcolors.FAIL + ' [NG] Did recognize input for "%s": %s'%(dasname,inputarg) + bcolors.ENDC
instance = 'prod/phys03' if 'USER' in dasname else 'prod/global'
dascmd = 'das_client --limit=0 --query=\"summary dataset=%s instance=%s\"'%(dasname,instance)
if args.verbose:
print dascmd
dasargs = shlex.split(dascmd)
output, error = subprocess.Popen(dasargs, stdout = subprocess.PIPE, stderr= subprocess.PIPE).communicate()
if not "nevents" in output:
print bcolors.BOLD + bcolors.FAIL + ' [NG] Did not find nevents for "%s" in DAS. Return message:'%(dasname) + bcolors.ENDC
print bcolors.FAIL + ' ' + output + bcolors.ENDC
return False
total_das = Double(output.split('"nevents":')[1].split(',')[0])
fraction = total_processed/total_das
if fraction > 1.001:
print bcolors.BOLD + bcolors.FAIL + ' [NG] DAS entries = %d, Processed in tree = %d (frac = %.2f > 1%s)'%(total_das,total_processed,fraction,nfiles) + bcolors.ENDC
elif fraction > 0.8:
print bcolors.BOLD + bcolors.OKBLUE + ' [OK] DAS entries = %d, Processed in tree = %d (frac = %.2f%s)'%(total_das,total_processed,fraction,nfiles) + bcolors.ENDC
else:
print bcolors.BOLD + bcolors.FAIL + ' [NG] DAS entries = %d, Processed in tree = %d (frac = %.2f < 0.8%s)'%(total_das,total_processed,fraction,nfiles) + bcolors.ENDC
return True
def getSampleShortName(dasname):
"""Get short subdir and sample name from sample_dict."""
#if '__nanoaod' in dasname.lower():
# dasname = dasname[:dasname.lower().index('__nanoaod')]
#if '__user' in dasname.lower():
# dasname = dasname[:dasname.lower().index('__user')]
if args.verbose:
print "getSampleShortName: %s"%(dasname)
dasname = dasname.replace('__','/').lstrip('/')
for subdir, samplename, pattern in sample_dict:
matches = re.findall(pattern,dasname)
if matches:
samplename = samplename.replace('$MASS',matches[0]).replace('$RUN',matches[0])
if args.verbose:
print "getSampleShortName: MATCH! subdir=%s, samplename=%s, pattern=%s"%(subdir, samplename, pattern)
return subdir, samplename
print bcolors.BOLD + bcolors.WARNING + '[WN] getSampleShortName: did not find subdir and short sample name for "%s"! Will save in subdir \'unknown\''%(dasname) + bcolors.ENDC
return "unknown", dasname.replace('/','__')
def getSubdir(dir):
for subdir in subdirs:
if '*' in subdir or '?' in subdir:
if fnmatch(dir,subdir):
return subdir
else:
if subdir==dir[:len(subdir)]:
return subdir
return "unknown"
def matchSampleToPattern(sample,patterns):
"""Match sample name to some pattern."""
sample = sample.lstrip('/')
if not isinstance(patterns,list):
patterns = [patterns]
for pattern in patterns:
if '*' in pattern or '?' in pattern:
if fnmatch(sample,pattern+'*'):
return True
else:
if pattern in sample[:len(pattern)+1]:
return True
return False
def ensureDirectory(dirname):
"""Make directory if it does not exist."""
if not os.path.exists(dirname):
os.makedirs(dirname)
print '>>> made directory "%s"'%(dirname)
if not os.path.exists(dirname):
print '>>> failed to make directory "%s"'%(dirname)
return dirname
headeri = 0
def header(*strings):
global headeri
title = ', '.join([str(s).lstrip('_') for s in strings if s])
string = ("\n\n" if headeri>0 else "") +\
" ###%s\n" % ('#'*(len(title)+3)) +\
" # %s #\n" % (title) +\
" ###%s\n" % ('#'*(len(title)+3))
headeri += 1
return string
def naturalSort(string):
"""Key for sorting strings according to numerical order."""
return [ int(s) if s.isdigit() else s for s in re.split(r'(\d+)',string) ]
if __name__ == '__main__':
print
main(args)
print