These are the required flags that must be used during Execution. All of these commands must be used via the command line.
- Specify a blastp or blastx annotation
- If - -runP is selected with a nucleotide input, frame selection will be ran and annotation stages will be executed with protein sequences (blastp)
- If - -runP is selected with a protein input, frame selection will not be ran and annotation will be executed with protein sequences (blastp)
- If - -runN is selected with nucleotide input, frame selection will not be ran and annotation will be executed with nucleotide sequences (blastx)
- Path to the transcriptome file (either nucleotide or protein)
- Specify up to 5 DIAMOND indexed (.dmnd) databases to run similarity search against
--|flag_path| [string] [CMD]
- Point to |config_file| to specify file paths
- Default: |config_file| residing in the current working directory