These are the flags specific to Frame Selection using either GeneMarkS-T or TransDecoder. These will be used via the command line (denoted CMD) or ini file (denoted INI).
- Specify the frame selection software to use
- GeneMarkS-T
- TransDecoder (default)
- Tell EnTAP to mark all of the transcripts as 'complete'. This will only be seen in the final output and will not affect the run.
- Specify the minimum protein length
- Specify this flag if you would like to pipe the command, '--no_refine_starts' to TransDecoder.
- "This will 'start refinement identifies potential start codons for 5' partial ORFs using a PWM, process on by default". (From TransDecoder documentation)
- Default: False