make_jobs_events.sh

#!/bin/bash

# job names / labels:
JOBS_NAME[0]='events'

# number of particles to release:
REL_PARTS[0]='10000'

# split interval:
ITSPLIT[0]='99999999'

# ind_receptor mass units:
IND_RECEPTOR[0]='1'

# output height levels:
OUT_HEIGHTS[0]='15,50,100,250,750,1000,2000,4000,7000,10000'

# particle release heights:
REL_HEIGHTS='650 525 400'

# template directory:
#TEMPL_DIR=$(dirname $(readlink -f ${0}))/../templates/events
TEMPL_DIR=/nobackup/eehgu/everest-flexpart/templates/events

# job running script:
#RUN_SCRIPT=$(dirname $(readlink -f ${0}))/../scripts/run_job.sh
RUN_SCRIPT=/nobackup/eehgu/everest-flexpart/scripts/run_job.sh

date_file='maturation_hours.txt'

# run length (3 days):

RUN_LEN=259200

# data type, ei or ea:
DATA_TYPE='ea'

# get number of job types / names:
NUM_JOB_NAMES=$((${#JOBS_NAME[@]}))

# for each job type:
for i in $(seq 0 ${NUM_JOB_NAMES})
do
  # directory in to which directories will be copied / models will be run:
  #OUT_DIR=$(dirname $(readlink -f ${0}))/${JOBS_NAME[${i}]}
  OUT_DIR=/nobackup/eehgu/everest-flexpart/${JOBS_NAME[${i}]}
  # make sure OUT_DIR exists:
  mkdir -p ${OUT_DIR}
  
  while read p
  do
    SD=${p:0:8}
    SH=${p:9:6}
    ED=${p:16:8}
    EH=${p:25:6}

    for REL_HEIGHT in ${REL_HEIGHTS}
    do
      # run dir:
      RD="${OUT_DIR}/${SD}${SH}-${ED}${EH}_REL_${REL_HEIGHT}"
      # create directory for this run:
      rm -fr ${RD}
      \cp -r ${TEMPL_DIR} ${RD}
      # update pathnames:
      sed -i "s|XXX|${RD}|g" ${RD}/pathnames
      sed -i "s|XX|${DATA_TYPE}|g" ${RD}/pathnames
      # update outgrid file:
      sed -i "s|XXX|${OUT_HEIGHTS[${i}]}|g" ${RD}/options/OUTGRID
      # update release file:
      sed -i "s|XXXXXXXX|${SD}|g" ${RD}/options/RELEASES
      sed -i "s|XXXXXX|${SH}|g" ${RD}/options/RELEASES
      sed -i "s|XXXXX|${REL_PARTS[${i}]}|g" ${RD}/options/RELEASES
      sed -i "s|XXX|${REL_HEIGHT}|g" ${RD}/options/RELEASES
      # update command file:
      sed -i "s|XXXEDXXX|${SD}|g" ${RD}/options/COMMAND
      sed -i "s|XXETXX|${SH}|g" ${RD}/options/COMMAND
      sed -i "s|XXXSDXXX|${ED}|g" ${RD}/options/COMMAND
      sed -i "s|XXSTXX|${EH}|g" ${RD}/options/COMMAND
      sed -i "s|XXXISXXX|${ITSPLIT[${i}]}|g" ${RD}/options/COMMAND
      sed -i "s|XXXIRXXX|${IND_RECEPTOR[${i}]}|g" ${RD}/options/COMMAND
      # run job script:
      \cp ${RUN_SCRIPT} ${RD}/run_job.sh
      # increase run time:
      #sed -i 's|0:20:00|8:00:00|g' ${RD}/run_job.sh
      # increase memory:
      #sed -i 's|-l h_vmem=16G|-l h_vmem=24G|g' ${RD}/run_job.sh
      # make executable:
      chmod 755 ${RD}/run_job.sh
    done
  done < $date_file
done