Epinecrophylla_iqtree.pbs

#!/bin/bash
#PBS -q checkpt
#PBS -l nodes=1:ppn=20
#PBS -l walltime=72:00:00
#PBS -N Epinec_IQtree
#PBS -A allocation
#PBS -m e
#PBS -M username

date

module unload gcc/4.9.0
module load gcc/6.4.0

export WORK_DIR=/work/ojohnson/Epinecrophylla/

cd $WORK_DIR

#/work/ojohnson/conda_pkg_dir/iqtree-1.6.12-he513fc3_0/bin/iqtree \

/home/ojohnson/iqtree-1.7-beta18-Linux/bin/iqtree \
-p 2_phasing/Epinecrophylla-phased-mafft-phylip-edge-trimmed-clean-75percent \
--prefix Epinecrophylla \
-bb 1000 -nt 20

date

exit 0