Unable to install via install.packages("hdf5r")

[TeaByrd]

Hey hdf5r team,

In order to install Seutrat-Disk, I need to install hdf5r.

I run R 4.1 from my conda env and facing this issue when installing via: install.packages("hdf5r"):

...

/HelperStructs.h:33:3: error: unknown type name 'H5O_token_t'; did you mean 'H5O_type_t'?
  H5O_token_t token;
  ^~~~~~~~~~~
  H5O_type_t
/Users/thomaslordick/opt/anaconda3/envs/r4-base/include/H5Opublic.h:98:3: note: 'H5O_type_t' declared here
} H5O_type_t;
  ^
In file included from const_export.c:23:
In file included from ./const_export.h:22:
In file included from ./global.h:33:
./HelperStructs.h:81:3: error: unknown type name 'H5L_info1_t'
  H5L_info1_t link;
  ^
2 errors generated.
make: *** [/Users/thomaslordick/opt/anaconda3/envs/r4-base/lib/R/etc/Makeconf:170: const_export.o] Error 1
ERROR: compilation failed for package ‘hdf5r’

Anyone knows what to do? :/

Thanks in advance,
Thomas

[millerkaplanlab]

I'm having the same issue, but I'm using a Mac (Big Sur). Can anyone help? I've tried installing from source and have also used brew in Terminal, which seems to install properly but is not recognized by R.