/
NEWS
49 lines (35 loc) · 1.18 KB
/
NEWS
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
ccfindR 1.5.0
================
Changes:
* Revised default meta_gene.cv(..., cv.max=Inf)
* Added assignCelltype(...)
ccfindR 1.4.1
================
Changes:
* Added URL to published article.
* Revised optimal_rank(...) such that Bayes factor criterion is
used.
* Fixed filter_genes(...) for cases with non-expressed genes
ccfindR 1.3.1
================
Changes:
* Changed definition of likelihood function in ML-NMF outputs from
factorize(...)
such that matrix elements with zero counts are included
ccfindR 1.3.0
================
Changes:
* Added C++ code update step in vb_factorize(..., useC=TRUE)
* Added Singular value decomposition initializer for
vb_factorize(..., initializer='svd2')
random initial condition: initializer='random'
* Changed default: filter_genes(...,rescue.genes=FALSE)
* Changed filter_genes(), vmr.min action from vmr >= vmr.min to vmr > vmr.min
(removes genes with vmr=0)
* Added parallel run for vb_factorize(..., ncores=10)
* Added feature_map(...)
ccfindR 1.0.0 (Release date: 2018-04-06)
================
Changes:
* Split plot functionality from filter_genes() into plot_genes().
* Removed file name arguments from read_10x() and write_10x().