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ui.py
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ui.py
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#!/usr/bin/python3
# -*- coding: utf-8 -*-
import os
import sys
sys.setrecursionlimit(10000) # to prevent the display issue if so many measurements are rejected at once.
import time
print(
'''
============================================================
d8888b. d88888b .d8888. d888888b d8888b. db db
88 `8D 88' 88' YP `88' 88 `8D `8b d8'
88oobY' 88ooooo `8bo. 88 88oodD' `8bd8'
88`8b 88~~~~~ `Y8b. 88 88~~~ 88
88 `88. 88. db 8D .88. 88 88
88 YD Y88888P `8888Y' Y888888P 88 YP
============================================================
''')
from PyQt5.QtWidgets import (QMainWindow, QSplashScreen, QApplication, QPushButton, QWidget,
QTabWidget, QVBoxLayout, QGridLayout, QLabel, QLineEdit, QMessageBox, QSplitter,
QFileDialog, QCheckBox, QComboBox, QTextEdit, QSlider, QHBoxLayout, QFrame,
QTableWidget, QFormLayout, QTableWidgetItem, QHeaderView, QProgressBar, QDialog,
QStackedLayout, QRadioButton, QGroupBox, QTextBrowser, QMenu)#, QAction, qApp, QButtonGroup, QListWidget, QShortcut)
from PyQt5.QtGui import QIcon, QPixmap, QIntValidator, QDoubleValidator, QColor, QPalette#, QKeySequence
from PyQt5.QtCore import QThread, pyqtSignal, QTimer, QUrl, QObject#, QProcess#, QSize
from PyQt5.QtCore import Qt
from functools import partial
QApplication.setAttribute(Qt.AA_EnableHighDpiScaling, True) # for high dpi display
QApplication.setAttribute(Qt.AA_UseHighDpiPixmaps, True)
import threading
import traceback
# COMMENT below is using UI automatic testing
# from resipy.Project import ResIPy_version
# import matplotlib
# matplotlib.use('Qt5Agg')
# from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg
# from matplotlib.backends.backend_qt5 import NavigationToolbar2QT as NavigationToolbar
# from matplotlib.figure import Figure
# import numpy as np
# import pandas as pd
# from datetime import datetime
# from matplotlib import rcParams
# rcParams.update({'font.size': 11}) # CHANGE HERE for graph font size
# import platform
# OS = platform.system()
# from subprocess import PIPE, Popen
# from urllib import request as urlRequest
# import webbrowser
#try:
# import pyvista as pv
# pvfound = True
#except:
# pvfound = False
# print('WARNING: pyvista not found, 3D plotting capabilities will be limited.')
# from resipy.Project import R2
# from resipy.r2help import r2help
# debug options
DEBUG = True # set to false to not display message in the console
def pdebug(*args, **kwargs):
if DEBUG:
print('DEBUG:', *args, **kwargs)
else:
pass
#%% General crash ERROR
def errorMessage(etype, value, tb):
print('ERROR begin:')
traceback.print_exception(etype, value, tb)
print('ERROR end.')
errorMsg = traceback.format_exception(etype, value, tb,limit=None, chain=True)
finalError ='Build: %s\n' % ResIPy_version # adding ResIPy version and system info to the error
for key in sysinfo: # adding system info to the error
finalError += str(key) + ': ' + str(sysinfo[key]) + '\n'
for errs in errorMsg:
finalError += errs
msg = QMessageBox()
msg.setIcon(QMessageBox.Critical)
msg.setText("<b>Critical error:</b>")
msg.setInformativeText('''Please see the detailed error below.<br>You can report the errors at:<p><a href='https://gitlab.com/hkex/resipy/issues'>https://gitlab.com/hkex/resipy/issues</a></p><br>''')
msg.setWindowTitle("Error!")
msg.setDetailedText('%s' % (finalError))
msg.setStandardButtons(QMessageBox.Retry)
msg.exec_()
def catchErrors():
sys.excepthook = errorMessage
threading.Thread.__init__
#%%get relative path of images
def resource_path(relative_path):
if hasattr(sys, '_MEIPASS'):
return os.path.join(sys._MEIPASS, relative_path)
return os.path.join(os.path.abspath("."), relative_path)
class customThread(QThread):
''' class needed to run out of main thread computation and then emit
signal to the main GUI thread to display message box.
'''
signal = pyqtSignal('PyQt_PyObject')
def __init__(self, func):
QThread.__init__(self)
self.func = func
def run(self):
output = self.func()
self.signal.emit(output) # inform the main thread of the output
# worker class to run the inversion in another thread
# https://realpython.com/python-pyqt-qthread/
class Worker(QObject):
finished = pyqtSignal()
progress = pyqtSignal('PyQt_PyObject')
def __init__(self, project, kwargs, pseudo=False):
QThread.__init__(self)
self.project = project
self.kwargs = kwargs
self.pseudo = pseudo
def run(self):
"""Long-running task."""
def emitLog(x):
self.progress.emit(x)
self.kwargs['dump'] = emitLog
if self.pseudo == False:
self.project.invert(**self.kwargs)
else:
self.project.invertPseudo3D(**self.kwargs)
self.finished.emit()
# small code to see where are all the directories
frozen = 'not'
if getattr(sys, 'frozen', False):
# we are running in a bundle
frozen = 'ever so'
bundle_dir = sys._MEIPASS
else:
# we are running in a normal Python environment
bundle_dir = os.path.dirname(os.path.abspath(__file__))
pdebug( 'we are',frozen,'frozen')
pdebug( 'bundle dir is', bundle_dir )
pdebug( 'sys.argv[0] is', sys.argv[0] )
pdebug( 'sys.executable is', sys.executable )
pdebug( 'os.getcwd is', os.getcwd() )
#%% MatplotlibWidget class
class MatplotlibWidget(QWidget):
def __init__(self, parent=None, figure=None, navi=False, itight=False,
threed=False, aspect='auto'):
super(MatplotlibWidget, self).__init__(parent) # we can pass a figure but we can replot on it when
# pushing on a button (I didn't find a way to do it) while with the axes, you can still clear it and
# plot again on them
self.callback = None
clearIt = False
if figure is None:
clearIt = True
figure = Figure(tight_layout=itight) # tight_layout will be called internally for each draw
self.canvas = FigureCanvasQTAgg(figure)
if threed is True:
axes = figure.add_subplot(111, projection='3d')
else:
axes = figure.add_subplot(111)
else:
axes = figure.get_axes()
self.figure = figure
if resipySettings.param['dark'] == 'True':
self.figure.set_facecolor((0.2,0.2,0.2)) # just making figures's face color grey not the whole plot
self.axis = axes
self.xlim = None
self.ylim = None
self.xlim0 = None
self.ylim0 = None
self.aspect = aspect
self.layoutVertical = QVBoxLayout(self)
self.layoutVertical.addWidget(self.canvas)#, stretch = 1, alignment=Qt.AlignCenter)
if clearIt is True:
self.clear()
if navi is True:
self.navi_toolbar = NavigationToolbar(self.canvas, self)
self.navi_toolbar.setMaximumHeight(30)
self.navi_toolbar.actions()[0].triggered.connect(self.getHome)
self.layoutVertical.addWidget(self.navi_toolbar)
def setMinMax(self, vmin=None, vmax=None):
coll = self.axis.collections[0]
if vmin is None:
vmin = np.nanmin(coll.get_array())
else:
vmin = float(vmin)
if vmax is None:
vmax = np.nanmax(coll.get_array())
else:
vmax = float(vmax)
coll.set_clim(vmin, vmax)
self.canvas.draw()
def plot(self, callback, aspect = None, threed=False):
''' call a callback plot function and give it the ax to plot to
'''
self.figure.clear() # need to clear the figure with the colorbar as well
if threed is False:
ax = self.figure.add_subplot(111)
else:
ax = self.figure.add_subplot(111, projection='3d')
self.callback = callback
callback(ax=ax)
if aspect == None:
aspect = self.aspect
ax.set_aspect(aspect)
self.canvas.draw()
def setCallback(self, callback):
self.callback = callback
self.xlim0 = None
self.ylim0 = None
self.xlim = None
self.ylim = None
''' to keep the zoom level we register event on xylim change and store it
as attribute of the MatplotlibWidget. At first drawn of the figure by
replot() we also set up xlim0 and ylim0 to be triggered by the 'home'
button. If another replot is triggered the plot will programmatically
restore the previous zoom level using getHome()
'''
def on_xlims_change(self, ax):
self.xlim = ax.get_xlim()
def on_ylims_change(self, ax):
self.ylim = ax.get_ylim()
def setHome(self, ax):
xlim = ax.get_xlim()
if (xlim[0] != 0) | (xlim[1] != 1): # it means callback actually plot smth
self.xlim0 = ax.get_xlim()
self.ylim0 = ax.get_ylim()
def getHome(self):
self.axis.set_xlim(self.xlim0)
self.axis.set_ylim(self.ylim0)
self.canvas.draw()
def restoreZoom(self):
self.figure.axes[0].set_xlim(self.xlim)
self.figure.axes[0].set_ylim(self.ylim)
def replot(self, threed=False, aspect=None, **kwargs):
self.figure.clear()
if threed is False:
ax = self.figure.add_subplot(111)
else:
ax = self.figure.add_subplot(111, projection='3d')
self.axis = ax
self.callback(ax=ax, **kwargs)
if self.xlim0 is None:
self.setHome(ax)
ax.callbacks.connect('xlim_changed', self.on_xlims_change)
ax.callbacks.connect('ylim_changed', self.on_ylims_change)
if aspect == None:
aspect = self.aspect
ax.set_aspect(aspect)
if self.xlim0 is not None:
self.restoreZoom()
self.canvas.draw()
def clear(self):
self.axis.clear()
self.figure.clear()
self.canvas.draw()
#%% Main class
class App(QMainWindow):
def __init__(self, parent=None):
super().__init__()
# do the checks for wine and updates in seperate thread
tupdate = customThread(self.updateChecker)
tupdate.signal.connect(self.updateCheckerShow)
tupdate.start()
twine = customThread(self.checkWine)
twine.signal.connect(self.checkWineShow)
twine.start()
self.setWindowTitle('ResIPy v' + ResIPy_version)
self.setGeometry(100,100,1100,600)
self.newwd = os.path.join(bundle_dir, 'resipy')
# UI attributes (sync with self.project attributes when instantiated)
self.project = None
self.loadedProjectFlag = False # to prevent removing loaded files from working directory
self.typ = 'R2'
self.parser = None
self.fname = None
self.iBatch = False
self.iTimeLapse = False
self.iBorehole = False
self.iForward = False
self.inputPhaseFlag = False
self.iCropping = True # by default crop the mesh
self.num_xz_poly = None # to store the values
self.tempElec = None # place holder to compare the new electrode agains
self.clip = None # to store the clipped mesh for 3D forward
self.apiLog = '' # store API calls
self.writeLog('# -------- ResIPy log file -------\n')
if frozen == 'not':
self.datadir = os.path.join(bundle_dir, './examples')
else:
self.datadir = os.path.join(bundle_dir, 'resipy', 'examples')
pdebug('self.datadir=', self.datadir)
self.plotAspect = 'equal'
self.iDesign = False # boolean to know if the mesh has been designed before meshing
self.tableWidget = QWidget()
self.layout = QVBoxLayout()
self.tabs = QTabWidget()
#%% message bar below the UI for info and error message
self.timer = QTimer() # a better method to get rid of expired messages in status bar
if resipySettings.param['dark'] == 'True':
initErrMsgColor = 'white'
else:
initErrMsgColor = 'black'
self.errorLabel = QLabel('<i style="color:%s">Error messages will be displayed here</i>' % initErrMsgColor)
self.errorLabel.setWordWrap(True)
QApplication.processEvents()
#%% tab 1 importing data
self.tabImporting = QTabWidget()
self.tabs.addTab(self.tabImporting, 'Importing')
self.tabImportingData = QWidget()
self.tabImporting.addTab(self.tabImportingData, 'Data')
self.tabImportingDataLayout = QVBoxLayout()
# restart a new project
# self.restartBtn = QPushButton('Restart')
# self.restartBtn.setAutoDefault(True)
# self.restartBtn.clicked.connect(self.restartFunc)
# self.restartBtn.setToolTip('Press to reset all tabs and start a new survey.')
# saving project
def saveProjectBtnFunc():
fname, _ = QFileDialog.getSaveFileName(self.tabImportingData,'Save Project',
self.datadir, '.resipy')
if fname != '':
self.loadingWidget('Saving project...')
self.project.saveProject(fname)
self.loadingWidget(exitflag=True)
self.infoDump('Project successfully saved.')
# self.saveProjectBtn = QPushButton('Save Project')
# self.saveProjectBtn.setToolTip('Save files and results to load them again in ResIPy later.')
# self.saveProjectBtn.clicked.connect(saveProjectBtnFunc)
# loading project
def loadBatchProject(): # for batch/time-lapse/pseudo 3D
self.fnamesCombo.clear()
self.psContourCheck.setEnabled(True)
self.mergElecCheck.setEnabled(True)
for s in self.project.surveys: # we already loaded the results
self.fnamesCombo.addItem(s.name)
self.errFitPlotIndexList.append(0)
self.iperrFitPlotIndexList.append(0)
self.errorCombosShow(True)
errorCombosFill(self.prepFnamesComboboxes)
if self.pseudo3DCheck.isChecked():
self.fnamesCombo.hide()
self.fnamesComboLabel.hide()
else:
self.fnamesCombo.show()
self.fnamesComboLabel.show()
def loadProjectBtnFunc():
fname, _ = QFileDialog.getOpenFileName(self.tabImportingData,'Open File', self.datadir, '*.resipy')
if fname != '':
try:
self.loadingWidget('Loading Project, please wait...', False)
k = Project(dirname=self.newwd)
k.loadProject(fname)
self.loadedProjectFlag = True
# set flags that call restartFunc()
if k.iTimeLapse:
self.timeLapseCheck.setChecked(True)
if k.iBatch:
self.batchCheck.setChecked(True)
if k.pseudo3DSurvey is not None:
self.pseudo3DCheck.setChecked(True)
if (k.typ == 'R2') | (k.typ == 'cR2'):
self.m2DRadio.setChecked(True)
else:
self.m3DRadio.setChecked(True)
if k.iForward:
self.fwdRadio.setChecked(True)
else:
self.invRadio.setChecked(True)
# pre-processing default flags
self.recipErrDataIndex = -1
self.errFitApplyToAll = True
self.errFitDataIndex = -1
self.iperrFitDataIndex = -1
self.errFitType.setCurrentIndex(0)
self.iperrFitType.setCurrentIndex(0)
self.dcaProgress.setValue(0)
self.errFitPlotIndexList = []
self.iperrFitPlotIndexList = []
self.phaseFiltDataIndex = -1
self.project = k # assign the project object
self.project.darkMode = eval(resipySettings.param['dark']) # set matplotlib theme
if self.pseudo3DCheck.isChecked():
self.elecTable.initTable(self.project.pseudo3DSurvey.elec) # load electrodes back in
else:
self.elecTable.initTable(self.project.elec) # load electrodes back in
self.tempElec = self.elecTable.getTable()
if self.project.iBorehole:
self.boreholeCheck.setChecked(True)
if not self.project.topo.empty:
if self.project.topo.shape[0] > 0:
self.topoTable.initTable(self.project.topo.values)
else:
self.topoTable.initTable(np.array([['',''],['','']]))
# display pseudo-section and filtering graphs
self.settingUI()
# load batch/time-lapse/pseudo 3D results
if self.batchCheck.isChecked() or self.timeLapseCheck.isChecked():
loadBatchProject()
# load IP
if (self.project.typ == 'cR2') | (self.project.typ == 'cR3t'):
self.ipCheck.setChecked(True)
self.ipCheck.setEnabled(True)
else:
self.ipCheck.setChecked(False)
self.ipCheck.setEnabled(False)
# display mesh
if self.project.mesh is not None:
if (self.project.typ == 'R2') | (self.project.typ == 'cR2'):
replotMesh()
else:
if pvfound:
self.mesh3Dplotter.clear() # clear all actors
if len(np.unique(self.project.mesh.df['region'])) == 1:
color_map = 'Greys'
color_bar = False
else:
color_map = 'Spectral'
color_bar = True
self.project.showMesh(ax=self.mesh3Dplotter, color_map=color_map, color_bar=color_bar)
else:
self.mwMesh3D.plot(self.project.showMesh, threed=True)
self.meshOutputStack.setCurrentIndex(2)
# load mesh regions back in
if self.project.mesh is not None:
self.regionTable.nrow = 0
self.regionTable.setRowCount(0)
for i in range(len(np.unique(self.project.mesh.df['region']))):
self.regionTable.addRow()
ie = self.project.mesh.df['region'] == i+1
row = self.project.mesh.df[ie]
self.regionTable.setItem(i, 0, QTableWidgetItem(str(row['res0'].values[0])))
self.regionTable.setItem(i, 1, QTableWidgetItem(str(row['phase0'].values[0])))
self.regionTable.setItem(i, 2, QTableWidgetItem(str(row['zones'].values[0])))
if row['param'].values[0] == 0:
self.regionTable.cellWidget(i,3).findChildren(QCheckBox)[0].setChecked(True)
# restore changed inversion settings
# self.modelDOICheck
# self.checkTxSign
if 'flux_type' in self.project.param:
if self.project.param['flux_type'] == 3:
self.flux_type.setCurrentIndex(0)
else:
self.flux_type.setCurrentIndex(1)
if 'singular_type' in self.project.param:
if self.project.param['singular_type'] == 1:
self.singular_type.setChecked(True)
else:
self.singular_type.setChecked(False)
if 'res_matrix' in self.project.param:
self.res_matrix.setCurrentIndex(self.project.param['res_matrix'])
if 'scale' in self.project.param:
self.scale.setText(str(self.project.param['scale']))
if 'patch_x' in self.project.param:
self.patch_x.setText(str(self.project.param['patch_x']))
if 'patch_z' in self.project.param:
self.patch_z.setText(str(self.project.param['patch_z']))
if 'inv_type' in self.project.param:
self.inv_type.setCurrentIndex(self.project.param['inv_type'])
if 'target_decrease' in self.project.param:
self.target_decrease.setText(str(self.project.param['target_decrease']))
if 'data_type' in self.project.param:
self.data_type.setCurrentIndex(self.project.param['data_type'])
if 'reg_mode' in self.project.param:
self.reg_mode.setCurrentIndex(self.project.param['reg_mode'])
if 'tolerance' in self.project.param:
self.tolerance.setText(str(self.project.param['tolerance']))
if 'max_iter' in self.project.param:
self.max_iterations.setText(str(self.project.param['max_iter']))
if 'error_mod' in self.project.param:
self.error_mod.setCurrentIndex(self.project.param['error_mod'])
if 'alpha_aniso' in self.project.param:
self.alpha_aniso.setText(str(self.project.param['alpha_aniso']))
if 'alpha_s' in self.project.param:
self.alpha_s.setText(str(self.project.param['alpha_s']))
if 'min_error' in self.project.param:
self.min_error.setText(str(self.project.param['min_error']))
if 'a_wgt' in self.project.param:
self.a_wgt.setText(str(self.project.param['a_wgt']))
if 'b_wgt' in self.project.param:
self.b_wgt.setText(str(self.project.param['b_wgt']))
if 'rho_min' in self.project.param:
self.rho_min.setText(str(self.project.param['rho_min']))
if 'rho_max' in self.project.param:
self.rho_max.setText(str(self.project.param['rho_max']))
# display inversion results
if len(self.project.meshResults) > 0:
if self.fwdRadio.isChecked() and len(self.project.meshResults) == 1: # a fwd-only project is saved
pass
else:
self.displayInvertedResults()
prepareInvError()
self.logText.setText(self.project.invLog)
self.loadingWidget(exitflag=True)
self.loadedProjectFlag = False # now if user toggles stuff, working directory should be cleaned.
# activate tabs
self.activateTabs(True)
if self.project.iForward:
self.tabs.setTabEnabled(4, True)
self.tabs.setTabEnabled(5, True)
self.tabs.setTabEnabled(6, True)
# write log and let the world knows!
self.writeLog('k.loadProject("{:s}")'.format(fname))
self.infoDump('Project successfully loaded.')
except Exception as e:
self.loadingWidget(exitflag=True)
self.errorDump('Error in loading project: ' + str(e))
# instead, let's make a hamburger menu in the top right corner
self.optionMenu = QMenu()
self.optionMenu.addAction('Load Project', loadProjectBtnFunc)
self.optionMenu.addAction('Save Project', saveProjectBtnFunc)
self.optionMenu.addAction('Restart Project', self.restartFunc)
self.optionMenu.addAction('Save API log', self.saveLog)
themeMode = 'Light theme' if resipySettings.param['dark'] == 'True' else 'Dark theme'
self.optionMenu.addAction(themeMode, self.darkModeFunc)
self.optionMenu.addAction('Restart ResIPy', self.restartGUI)
self.hamBtn = QPushButton('Options')
self.tabs.setCornerWidget(self.hamBtn, Qt.TopRightCorner)
self.hamBtn.setMenu(self.optionMenu)
def dimSurvey():
if self.m2DRadio.isChecked():
self.typ = self.typ.replace('3t','2')
if self.project is not None:
self.project.typ = self.project.typ.replace('3t','2')
self.writeLog('k.typ = {:s}'.format(self.project.typ))
# importing tab
self.elecDx2DTape.show()
self.elecTable.setColumnHidden(2, True)
self.topoTable.setColumnHidden(2, True)
self.regular3DCheck.setChecked(False)
self.pseudo3DCheck.setVisible(True)
if pvfound:
self.pseudo3DCheck.setEnabled(True)
else:
self.pseudo3DCheck.setEnabled(False)
if self.project is not None:
if self.project.elec is not None:
self.elecTable.initTable(self.project.elec)
self.elecLineEdit.setEnabled(False)
self.elecLineSpacingEdit.setEnabled(False)
self.elecLineEdit.setText('1')
self.boreholeCheck.setChecked(False)
self.boreholeCheck.setEnabled(True)
self.regular3DCheck.setVisible(False)
self.pParams['threed'] = False
self.pParamsIP['threed'] = False
self.pseudoLayout.setCurrentIndex(0)
# self.ipCheck.setEnabled(True)
#Pre-processing tab
self.recipErrorBottomTabs.setTabEnabled(0, True)
self.recipErrorBottomTabs.setCurrentIndex(0)
self.recipErrorSaveBtn.setVisible(True)
self.tabPreProcessing.setCurrentIndex(0)
self.tabPreProcessing.setTabEnabled(0, True)
self.mwManualFiltering.show()
try:
if not self.project.surveys[0].df.empty:
self.tabs.setTabEnabled(1, True)
except:
pass
# mesh tab
self.meshQuadGroup.setVisible(True)
self.meshTrianGroup.setVisible(True)
self.mesh3DGroup.setVisible(False)
self.meshTetraGroup.setVisible(False)
self.meshTankGroup.setVisible(False)
self.meshCylinderGroup.setVisible(False)
self.meshCustom2dGroup.setVisible(True)
self.meshCustom3dGroup.setVisible(False)
self.instructionLabel.setVisible(True)
self.meshAspectBtn.setVisible(True)
self.resetMeshBtn.setVisible(True)
self.instructionLabel3D.setVisible(False)
self.select3DRegionBtn.setVisible(False)
self.add3DRegionBtn.setVisible(False)
self.fin3DRegionBtn.setVisible(False)
# inversion settings
show3DOptions(False)
if self.project is not None:
showIpOptions(self.typ[0] == 'c')
# inversion tab
self.contourCheck.setVisible(True)
self.clipCornersCheck.setVisible(True)
self.doiSensCheck.setVisible(True)
self.sensWidget.setVisible(True)
show3DInvOptions(False)
# post-processing
self.errorGraphs.setTabEnabled(0, True)
self.errorGraphs.setCurrentIndex(0)
else:
self.typ = self.typ.replace('2','3t')
if self.project is not None:
self.project.typ = self.project.typ.replace('2', '3t')
self.writeLog('k.typ = {:s}'.format(self.project.typ))
# importing tab
self.elecDx2DTape.hide()
self.elecLineEdit.setEnabled(True)
self.elecLineSpacingEdit.setEnabled(True)
self.elecTable.setColumnHidden(2, False)
self.topoTable.setColumnHidden(2, False)
if self.project is not None:
if self.project.elec is not None:
self.elecTable.initTable(self.project.elec)
self.invRadio.setChecked(True)
# self.boreholeCheck.setChecked(True) # to disable pseudo-section
self.boreholeCheck.setEnabled(False)
self.regular3DCheck.setVisible(True)
self.pseudo3DCheck.setChecked(False)
self.pseudo3DCheck.setVisible(False)
self.pParams['threed'] = True
self.pParamsIP['threed'] = True
if pvfound:
self.pseudoLayout.setCurrentIndex(1)
# self.ipCheck.setEnabled(False) # TODO disabling cR3t for now
#Pre-processing tab
self.recipErrorBottomTabs.setTabEnabled(0, False)
self.recipErrorSaveBtn.setVisible(False)
self.mwManualFiltering.hide() # manual filtering pseudo section is not optimized for 3D
try:
if all(self.project.surveys[0].df['irecip'].values == 0) is False:
self.recipErrorBottomTabs.setCurrentIndex(1)
except:
pass
# mesh tab
self.meshQuadGroup.setVisible(False)
self.meshTrianGroup.setVisible(False)
self.mesh3DGroup.setVisible(True)
self.mesh3DBtn.disconnect()
self.mesh3DBtn.clicked.connect(meshTetraFunc)
self.mesh3DCombo.disconnect()
self.mesh3DCombo.setCurrentIndex(0)
self.mesh3DCombo.currentIndexChanged.connect(mesh3DComboFunc)
self.meshTetraGroup.setVisible(True)
self.meshTankGroup.setVisible(False)
self.meshCylinderGroup.setVisible(False)
self.meshCustom3dGroup.setVisible(False)
self.meshCustom2dGroup.setVisible(False)
self.instructionLabel.setVisible(False)
self.meshAspectBtn.setVisible(False)
self.resetMeshBtn.setVisible(False)
self.instructionLabel3D.setVisible(True)
self.select3DRegionBtn.setVisible(True)
self.add3DRegionBtn.setVisible(True)
self.fin3DRegionBtn.setVisible(True)
# inversion settings
show3DOptions(True)
if self.project is not None:
showIpOptions(self.typ[0] == 'c')
# inversion tab
self.contourCheck.setVisible(False)
self.clipCornersCheck.setVisible(False)
self.doiSensCheck.setVisible(False)
self.sensWidget.setVisible(False)
show3DInvOptions(True)
# post-processing
self.errorGraphs.setTabEnabled(0, False)
self.errorGraphs.setCurrentIndex(1)
try: # to force update the pseudo sections
if self.project is not None:
self.plotPseudo()
if self.project.typ[0] == 'c':
self.plotPseudoIP()
except:
pass
self.m2DRadio = QRadioButton('2D')
self.m2DRadio.setChecked(True)
self.m2DRadio.toggled.connect(dimSurvey)
self.m3DRadio = QRadioButton('3D')
self.m3DRadio.setChecked(False)
self.m3DRadio.toggled.connect(dimSurvey)
self.dimLayout = QHBoxLayout()
self.dimLayout.addWidget(self.m2DRadio)
self.dimLayout.addWidget(self.m3DRadio)
self.dimLayout.setContentsMargins(0,0,0,0)
self.dimGroup = QGroupBox()
self.dimGroup.setLayout(self.dimLayout)
self.dimGroup.setFlat(True)
self.dimGroup.setContentsMargins(0,0,0,0)
self.dimGroup.setStyleSheet('QGroupBox{border: 0px;'
'border-style:inset;}')
# meta data (title and date of survey)
self.titleLabel = QLabel('Title')
self.titleEdit = QLineEdit()
self.titleEdit.setText('My beautiful survey')
self.titleEdit.setToolTip('This title will be used in the ".in" file.')
self.dateLabel = QLabel('Date')
self.dateEdit = QLineEdit()
self.dateEdit.setText(datetime.now().strftime('%Y-%m-%d')) # get today date
self.dateEdit.setToolTip('This date will be used in the ".in" file.')
def timeLapseCheckFunc(state):
if state == Qt.Checked:
self.iTimeLapse = True
if self.project is not None: # if there is already an R2 object
self.restartFunc()
self.reg_mode.setCurrentIndex(2)
self.importDataBtn.setText('Import multiple datasets')
self.importDataBtn.clicked.disconnect()
self.importDataBtn.clicked.connect(getdir)
self.batchCheck.setEnabled(False)
self.pseudo3DCheck.setEnabled(False)
self.pseudo3DCheck.setChecked(False)
else:
self.iTimeLapse = False
if self.project is not None:
self.restartFunc()
self.reg_mode.setCurrentIndex(0)
self.importDataBtn.setText('Import Data')
self.importDataBtn.clicked.disconnect()
self.importDataBtn.clicked.connect(importDataBtnFunc)
self.batchCheck.setEnabled(True)
self.pseudo3DCheck.setEnabled(True)
self.timeLapseCheck = QCheckBox('Time-lapse Survey')
self.timeLapseCheck.stateChanged.connect(timeLapseCheckFunc)
self.timeLapseCheck.setToolTip('Check to import time-lapse datasets and enable time-lapse inversion.')
def batchCheckFunc(state):
if state == Qt.Checked:
self.iBatch = True
if self.project is not None:
self.restartFunc()
self.importDataBtn.setText('Import multiple datasets')
self.importDataBtn.clicked.disconnect()
self.importDataBtn.clicked.connect(getdir)
self.timeLapseCheck.setEnabled(False)
else:
self.iBatch = False
if self.project is not None:
self.restartFunc()
self.importDataBtn.setText('Import Data')
self.importDataBtn.clicked.disconnect()
self.importDataBtn.clicked.connect(importDataBtnFunc)
self.timeLapseCheck.setEnabled(True)
self.batchCheck = QCheckBox('Batch Inversion')
self.batchCheck.stateChanged.connect(batchCheckFunc)
self.batchCheck.setToolTip('Check if you want to invert multiple surveys with the same settings and same electrodes.')
def boreholeCheckFunc(state):
if state == Qt.Checked:
self.iBorehole = True
self.errorGraphs.setTabEnabled(0, False)
if self.project is not None:
self.project.setBorehole(True)
self.writeLog('k.setBorehole(True)')
else:
self.iBorehole = False
self.errorGraphs.setTabEnabled(0, True)
if self.project is not None:
self.project.setBorehole(False)
self.writeLog('k.setBorehole(False)')
try:
if self.fname is not None:
self.plotPseudo()
self.plotPseudoIP()
except:
pass
self.boreholeCheck = QCheckBox('Unconventional Survey')
self.boreholeCheck.stateChanged.connect(boreholeCheckFunc)
self.boreholeCheck.setToolTip('Check if you have an unconventional survey (e.g. boreholes).\nThis will just change the pseudo-section.')
def pseudo3DFunc(state):
if state == Qt.Checked:
self.lineSpacing.setVisible(True)
self.lineSpacingLabel.setVisible(True)
self.create3DBtn.setVisible(True)
self.create3DBtn.clicked.disconnect()
self.create3DBtn.clicked.connect(createPseudo3DFunc)
self.importDataBtn.setVisible(False)
self.batchCheck.setChecked(True)
self.batchCheck.setEnabled(False)
self.mergElecCheck.setEnabled(False)
self.timeLapseCheck.setEnabled(False)
self.fwdRadio.setEnabled(False)
self.pseudoLayout.setCurrentIndex(1)
self.elecLineEdit.setEnabled(True)
self.elecLineSpacingEdit.setEnabled(True)
self.elecTable.setColumnHidden(2, False)
self.topoTable.hide() # we can't add extra topo points in here, we don't know which mesh they belong to
self.regionTable.hide() # we can't add regions at this level - future: set/design/create individual 2D meshes then create a pseudo 3D mesh
self.topoBtn.hide()
self.topoAddRowBtn.hide()
self.elecLabelTextP2 = '<br><b>IMPORTANT:</b> Labels <b>Must</b> be defined in <b><font color="red">"Line Number [space] Electrode Number"</font></b> format.'
self.designModelBtn.setEnabled(False)
self.importCustomMeshBtn2.setEnabled(False)
self.resetMeshBtn.hide()
self.instructionLabel.hide()
self.meshAspectBtn.hide()
self.meshSubLayout.setStretch(0,100)
self.meshSubLayout.setStretch(1,0)
self.meshOutputStack.setCurrentIndex(2)
else:
self.lineSpacing.setVisible(False)
self.lineSpacingLabel.setVisible(False)
self.create3DBtn.setVisible(False)
self.importDataBtn.setVisible(True)
self.batchCheck.setChecked(False)
self.batchCheck.setEnabled(True)
self.mergElecCheck.setEnabled(True)
self.timeLapseCheck.setEnabled(True)
self.fwdRadio.setEnabled(True)
self.pseudoLayout.setCurrentIndex(0)
self.elecLineEdit.setEnabled(False)
self.elecLineSpacingEdit.setEnabled(False)
self.elecTable.setColumnHidden(2, True)
self.topoTable.show()
self.regionTable.show()
self.topoBtn.show()
self.topoAddRowBtn.show()
self.elecLabelTextP2 = ''
self.designModelBtn.setEnabled(True)
self.importCustomMeshBtn2.setEnabled(True)
self.resetMeshBtn.show()
self.instructionLabel.show()
self.meshAspectBtn.show()
self.meshSubLayout.setStretch(0,70)
self.meshSubLayout.setStretch(1,30)
self.meshOutputStack.setCurrentIndex(1)
self.elecLabel.setText(self.elecLabelTextP1 + self.elecLabelTextP2)
self.pseudo3DCheck = QCheckBox('Pseudo 3D inversion from 2D lines')
self.pseudo3DCheck.setToolTip('Arrange 2D inversion lines in a 3D grid. ResIPy will assume batch 2D surveys are imported.\n'
'Electrodes can be manually set in "Electrodes (XYZ/Topo)" tab.\n'
'***beta*** some ResIPy features may not work properly.\n\n'
'IMPORTANT: electrode labels MUST be imported and have "<line number> <electrode number>" format.')
self.pseudo3DCheck.stateChanged.connect(pseudo3DFunc)
if pvfound is False: # We can't (don't want to) have this feature without pyvista!!
self.pseudo3DCheck.setEnabled(False)
def regular3DFunc(state):
if state == Qt.Checked:
self.lineSpacing.setVisible(True)
self.lineSpacingLabel.setVisible(True)
self.importDataBtn.setVisible(False)
self.create3DBtn.setVisible(True)
self.create3DBtn.clicked.disconnect()
self.create3DBtn.clicked.connect(create3DFunc)
else:
self.lineSpacing.setVisible(False)
self.lineSpacingLabel.setVisible(False)
self.create3DBtn.setVisible(False)
self.importDataBtn.setVisible(True)
self.regular3DCheck = QCheckBox('3D survey from 2D lines')
self.regular3DCheck.setToolTip('3D survey from 2D lines - electrodes can be manually set in "Electrodes (XYZ/Topo)" tab')
self.regular3DCheck.stateChanged.connect(regular3DFunc)
self.regular3DCheck.setVisible(False)
# select inverse or forward model
def fwdRadioFunc():
self.iForward = True
self.ftypeCombo.setEnabled(False)
self.invRadio.setChecked(False)
self.tabs.setTabEnabled(1,False)
self.tabs.setTabEnabled(3, True)
self.importDataBtn.setEnabled(False)
self.timeLapseCheck.setEnabled(False)
self.batchCheck.setEnabled(False)
self.pseudo3DCheck.setEnabled(False)
self.pseudo3DCheck.setChecked(False)
self.tabImporting.setTabEnabled(2,False) # no custom parser needed
if self.loadedProjectFlag is False: # loading a project doesn't need a restart
self.restartFunc() # let's first from previous inversion
self.nbElecEdit.setEnabled(True)
self.tabImporting.setTabEnabled(1, True) # here because restartFunc() set it to False
self.ipCheck.setEnabled(True)
self.psContourCheck.setEnabled(False)
self.mergElecCheck.setEnabled(False)
self.activateTabs(True)
self.fwdRadio = QRadioButton('Forward')
self.fwdRadio.setChecked(False)
self.fwdRadio.toggled.connect(fwdRadioFunc)
self.fwdRadio.setToolTip('To create a model, a sequence and see what output you can obtain.')
def invRadioFunc():
self.iForward = False
self.ftypeCombo.setEnabled(True)
self.fwdRadio.setChecked(False)
self.spacingEdit.setReadOnly(False)
self.tabs.setTabEnabled(1,True)
self.tabs.setTabEnabled(3, False)
self.tabImporting.setTabEnabled(1, False)
self.importDataBtn.setEnabled(True)
self.nbElecEdit.setEnabled(False)
self.timeLapseCheck.setEnabled(True)
self.ipCheck.setEnabled(False)
self.tabImporting.setTabEnabled(2,True)
self.batchCheck.setEnabled(True)
self.pseudo3DCheck.setEnabled(True)
self.timeLapseCheck.setChecked(False) # not checked by default
self.batchCheck.setChecked(False) # not checked by default
self.activateTabs(False)
self.invRadio = QRadioButton('Inverse')
self.invRadio.setChecked(True)
self.invRadio.toggled.connect(invRadioFunc)
self.invRadio.setToolTip('To invert data that is already collected.')
self.dimInvLayout = QHBoxLayout()
self.dimInvLayout.addWidget(self.fwdRadio)
self.dimInvLayout.addWidget(self.invRadio)
self.dimInvLayout.setContentsMargins(0,0,0,0)
self.dimInvGroup = QGroupBox()
self.dimInvGroup.setLayout(self.dimInvLayout)
self.dimInvGroup.setFlat(True)
self.dimInvGroup.setContentsMargins(0,0,0,0)
self.dimInvGroup.setStyleSheet('QGroupBox{border: 0px;'
'border-style:inset;}')
# ask for working directory, and survey file to input
def getwd():
fdir = QFileDialog.getExistingDirectory(self.tabImportingData, 'Choose Working Directory')
if fdir != '':
self.newwd = fdir
if self.project is not None:
self.project.setwd(fdir)
self.writeLog('k.setwd("{:s}")'.format(fdir))
print('Working directory = ', fdir)
self.wdBtn.setText(os.path.basename(self.newwd))
self.wdBtn = QPushButton('Working directory:' + os.path.basename(self.newwd))
self.wdBtn.setAutoDefault(True)
self.wdBtn.clicked.connect(getwd)
self.wdBtn.setToolTip('Select the working directory, containing your data\nThe working directory will automatically have all the necessary files for the inversion (e.g. R2.in, R2.exe, protocol.dat, f001_res.vtk, etc.)')