fftns test

hng · Mar 26, 2015 · a7f6994 · a7f6994
1 parent f2cb382
commit a7f6994
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/test/mafft.jl b/test/mafft.jl
@@ -43,6 +43,11 @@ mafft_fftnsi_expected = {("gi|166158130|ref|NP_001107279.1| interleukin 4 [Xenop
 
 @test mafft_fftnsi(Pkg.dir("BiomolecularStructures","examples/fasta","il4.fasta")) == mafft_fftnsi_expected
 
+
+mafft_fftns_expected = {("gi|166158130|ref|NP_001107279.1| interleukin 4 [Xenopus (Silurana) tropicalis]","MSNLGRILCAVLGLFHLLSANPVPS--------SKLQIAIEEIISELVNNKITHK-----KCFVPTPYDDEEEASVEEISCRAFKSLKHV---------CASER-----------KNLRLLNASLITMFSENVECSINNDEQKDLISVIEDLLTFFRAQMRKLVMNPKH--------"),("gi|55742622|ref|NP_999288.1| interleukin-4 precursor [Sus scrofa]","-MGLTSQLIPTLVCLLACTSNFVHG--------HKCDITLQEIIKTL--NILTARKNSCMELPVTDVFAAPENTTEKETFCRASTVLRHIYRHHT----CMK-------------SLLSGLDRNLSSMANM--TCSVHEAKKSTLKDFLERLKT---------IMKEKYSKC-----"),("gi|55741696|ref|NP_001007080.1| interleukin 4 [Gallus gallus]","---MSSSL-PTLLALLVL----LAGPGAVPTLCLQLSVPLMESIRIV--NDIQGE-VSCVKMNVTDIFADNKTNNKTELLCKASTIVWE--SQH-----CHK-------NLQGLFLNMRQL-LNASSTSLKA-PCPTAAGNTTSMEKFLADLRTFFH-----QLAKNK---------"),("gi|50978886|ref|NP_001003159.1| interleukin-4 precursor [Canis lupus familiaris]","-MGLTSQLIPTLVCLLALTSTFVHG--------HNFNITIKEIIKML--NILTARNDSCMELTVKDVFTAPKNTSDKEIFCRAATVLRQIYT-HN----CSN-------------RYLRGLYRNLSSMANK--TCSMNEIKKSTLKDFLERLKV---------IMQKKYYRH-----"),("gi|42627877|ref|NP_958427.1| interleukin-4 precursor [Rattus norvegicus]","-MGLSPHLAVTLFCFLICTGNGIHG--------CN-DSPLREIINTL--NQVTEKGTPCTEMFVPDVLTATRNTTENELICRASRVLRKFYFPRDVPP-CLK-------NKSGVLGELRKLCRGVSGLNSLR-SCTVNESTLTTLKDFLESLKS---------ILRGKYLQSCTSMS"),("gi|58743333|ref|NP_001008993.1| interleukin-4 isoform delta2 [Pan troglodytes]","-MGLTSQLLPPLFFLLACAGNFVHG--------HKCDITLQEIIKTL--NSLTEQ----------------KNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLN-SCPVKEANQSTLENFLERLKT---------IMREKYSKCSS---"),("gi|112807223|ref|NP_001036804.1| interleukin-4 precursor [Felis catus]","-MDLTSQLIPALVCLLAFTSTFVHG--------QNFNNTLKEIIKTL--NILTARNDSCMELTVMDVLAAPKNTSDKEIFCRATTVLRQIYTHHN----CST-------------KFLKGLDRNLSSMANR--TCSVNEVKKCTLKDFLERLKA---------IMQKKYSKH-----"),("2B8U:A|PDBID|CHAIN|SEQUENCE|HOMO SAPIENS","---------------------------------HKCDITLQEIIKTL--NSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLN-SCPVKEANQSTLENFLERLKT---------IMREKYSKCSS---")}
+
+@test mafft_fftns(Pkg.dir("BiomolecularStructures","examples/fasta","il4.fasta")) == mafft_fftns_expected
+
 mafft_nwnsi_expected = {("gi|166158130|ref|NP_001107279.1| interleukin 4 [Xenopus (Silurana) tropicalis]","MSNLGRILCAVLGLFHLLSANPVPSSKLQIAIEEIISELVNNKITHK-----KCFVPTPYDDEEEASVEEISCRAFKSLKHV---------CASER-----------KNLRLLNASLITMFSEN-----VECSINNDEQKDLISVIEDLLTFFRAQMRKLVMNPKH"),("gi|55742622|ref|NP_999288.1| interleukin-4 precursor [Sus scrofa]","MG-LTSQLIPTLVCLLACTSNFVHGHKCDITLQEIIKTL--NILTARKNSCMELPVTDVFAAPENTTEKETFCRASTVLRHIYRHHT----CMK-------------SLLSGLDRNLSSMANM-------TCSVHEAKKSTLKDFLERLKTIMKEKYSKC------"),("gi|55741696|ref|NP_001007080.1| interleukin 4 [Gallus gallus]","MSSSLPTLLALLVLLAGPGAVPTLCLQLSVPLMESIRIV--NDIQGE-VSCVKMNVTDIFADNKTNNKTELLCKASTIVWESQH-------CH--------------KNLQGLFLNMRQLLNASSTSLKAPCPTAAGNTTSMEKFLADLRTFFHQLAKNK------"),("gi|50978886|ref|NP_001003159.1| interleukin-4 precursor [Canis lupus familiaris]","MG-LTSQLIPTLVCLLALTSTFVHGHNFNITIKEIIKML--NILTARNDSCMELTVKDVFTAPKNTSDKEIFCRAATVLRQIYTHN-----CSN-------------RYLRGLYRNLSSMANK-------TCSMNEIKKSTLKDFLERLKVIMQKKYYRH------"),("gi|42627877|ref|NP_958427.1| interleukin-4 precursor [Rattus norvegicus]","MG-LSPHLAVTLFCFLICTGNGIHGCN-DSPLREIINTL--NQVTEKGTPCTEMFVPDVLTATRNTTENELICRASRVLRKFYFPRDVPP-CLKNKSGVL-------GELRKLCRGVSGLNSLR------SCTVNESTLTTLKDFLESLKSILRGKYLQSCTSMS-"),("gi|58743333|ref|NP_001008993.1| interleukin-4 isoform delta2 [Pan troglodytes]","MG-LTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTL--NSLTEQ----------------KNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLN------SCPVKEANQSTLENFLERLKTIMREKYSKCSS----"),("gi|112807223|ref|NP_001036804.1| interleukin-4 precursor [Felis catus]","MD-LTSQLIPALVCLLAFTSTFVHGQNFNNTLKEIIKTL--NILTARNDSCMELTVMDVLAAPKNTSDKEIFCRATTVLRQIYTHHN----CST-------------KFLKGLDRNLSSMANR-------TCSVNEVKKCTLKDFLERLKAIMQKKYSKH------"),("2B8U:A|PDBID|CHAIN|SEQUENCE|HOMO SAPIENS","-------------------------HKCDITLQEIIKTL--NSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLN------SCPVKEANQSTLENFLERLKTIMREKYSKCSS----")}
 
 @test mafft_nwnsi(Pkg.dir("BiomolecularStructures","examples/fasta","il4.fasta")) == mafft_nwnsi_expected