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Looking at the error message, this is a duplicate of issue #111:
File "C:\Users\alexs\anaconda3\envs\ai\lib\site-packages\bioservices\uniprot.py", line 744, in search
batch = batch.split("\n")[1:]
AttributeError: 'int' object has no attribute 'split'
The error message is the result of a bioservices process not cazy_webscraper. Make sure you are using the latest version of bioservices.
Side note:
We are currently altering cazy_webscraper so that it not longer uses bioservices.UniProt().get_df() method, and we are migrating to bioservices.UniProt().mapping() which will be faster and reduce the burden on the UniProt Rest API (and will also mean cazy_webscraper won't be using the section of bioservices code that keeps causing issues) -- progress is over on PR #115
We've both been busy atm, so progress is slower than expected. We still need to run a few more test runs, and update the unit tests prior releasing the update.
First I built the dabatase with:
cazy_webscraper <email> --classes AA
Then I tried:
cw_get_uniprot_data <path_to_db> --families AA17 -s
And I got this output:
The text was updated successfully, but these errors were encountered: