ensure correct compiler command/flags are used for SAMtools

easybuilders · Jul 6, 2016 · 4a2f5be · 4a2f5be
1 parent fda89fe
commit 4a2f5be
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/easybuild/easyblocks/s/samtools.py b/easybuild/easyblocks/s/samtools.py
@@ -70,10 +70,10 @@ def __init__(self, *args, **kwargs):
         self.lib_files = ["libbam.a"]
 
     def configure_step(self):
-        """
-        No configure
-        """
-        pass
+        """Ensure correct compiler command & flags are used via arguments to 'make' build command"""
+        for var in ['CC', 'CFLAGS']:
+            if var in os.environ:
+                self.cfg.update('buildopts', '%s="%s"' % (var, os.getenv(var)))
 
     def install_step(self):
         """