Merge pull request #3321 from rug-cit-ris/TopHat-foss2016a

easybuild/easyconfigs/b/Boost/Boost-1.61.0-foss-2016a.eb

@@ -0,0 +1,23 @@
+name = 'Boost'
+version = '1.61.0'
+
+homepage = 'http://www.boost.org/'
+description = """Boost provides free peer-reviewed portable C++ source libraries."""
+
+toolchain = {'name': 'foss', 'version': '2016a'}
+toolchainopts = {'pic': True, 'usempi': True}
+
+sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
+source_urls = [SOURCEFORGE_SOURCE]
+
+dependencies = [
+    ('bzip2', '1.0.6'),
+    ('zlib', '1.2.8'),
+]
+
+configopts = '--without-libraries=python'
+
+# also build boost_mpi
+boost_mpi = True
+
+moduleclass = 'devel'

easybuild/easyconfigs/t/TopHat/TopHat-2.1.1-foss-2016a.eb

@@ -0,0 +1,40 @@
+# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
+# Author: Pablo Escobar Lopez
+# Swiss Institute of Bioinformatics
+# Biozentrum - University of Basel
+# Modified by: Adam Huffman
+# The Francis Crick Institute
+
+easyblock = 'ConfigureMake'
+
+name = 'TopHat'
+version = '2.1.1'
+
+homepage = 'http://ccb.jhu.edu/software/tophat/'
+description = """TopHat is a fast splice junction mapper for RNA-Seq reads."""
+
+toolchain = {'name': 'foss', 'version': '2016a'}
+toolchainopts = {'pic': True}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = ['http://ccb.jhu.edu/software/tophat/downloads/']
+
+patches = [
+    'tophat-2.0.13-zlib.patch',
+]
+
+dependencies = [
+    ('Boost', '1.61.0'),
+    ('zlib', '1.2.8'),
+]
+
+configopts = '--with-boost=$EBROOTBOOST'
+
+parallel = 1
+
+sanity_check_paths = {
+    'files': ['bin/tophat'],
+    'dirs': [],
+}
+
+moduleclass = 'bio'