{bio,devel} [foss/2015a] Cufflinks 2.2.1 (REVIEW) #1351
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Automatic reply from Jenkins: Can I test this? |
rjeschmi
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| # issues with boost > 1.55, see https://github.com/cole-trapnell-lab/cufflinks/issues/3 | ||
| ('Boost', '1.55.0', '-Python-2.7.9'), | ||
| ('SAMtools', '0.1.19'), | ||
| ('Eigen', '3.2.3'), |
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I'm just sticking with the same version as intel-2015a, we could move them both forward if it makes sense...
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ok to test |
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Test PASSed. |
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| # issues with boost > 1.55, see https://github.com/cole-trapnell-lab/cufflinks/issues/3 | ||
| ('Boost', '1.51.0', '-Python-2.7.3'), | ||
| ('SAMtools', '0.1.18'), | ||
| ('Eigen', '3.1.1'), |
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these versions are quite different from the ones in the foss/2015a easyconfig?
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They are consistent with the versions for goolf-1.4.10 and tied to version of samtools used in tophat (and deps there).
I had a user recently load both the foss-2015a version of cufflinks and the goolf-1.4.10 version of tophat and have trouble.
And before you ask, tophat can't be compiled against GCC-4.9 (yet?)...
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We usually keep dependency versions consistent across easyconfigs for the same software version (Cufflinks), across toolchains...
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The deps in the foss/2015a easyconfig contributed here match the ones in the existing one for intel/2015a, so just align them accordingly here too?
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BTW: try and keep your users from mixing toolchains, that's a big bag of worms...
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Ok, I'll just kick the 1.4.10 version out since it isn't high priority
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removed a commit |
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Test report by @rjeschmi |
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Test report by @rjeschmi |
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The second report includes everything that is on top of the base foss-2015a install (which is why it is a bit bigger). |
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@boegel I'm pretty sure all the URLs got fixed earlier this year: https://github.com/hpcugent/easybuild-easyconfigs/pull/1335/files |
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Jenkins: test this please |
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Refer to this link for build results (access rights to CI server needed): This pull request is now ready for review/testing. Please try and find someone who can tackle this; contact @boegel if you're not sure what to do. |
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Test report by @boegel |
{bio,devel} [foss/2015a] Cufflinks 2.2.1 (REVIEW)
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