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如何使用csv数据集 #120

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LightR0 opened this issue Aug 10, 2023 · 1 comment

LightR0 commented Aug 10, 2023

看到的examples都是random生成一些node and edge，如何使用自己的数据集做为输入，例如sachs.xls、cyto_full_data.csv、goldstandard_insilico100_multifactorial_1.csv、Tuebingen_pairs.csv

Collaborator

shaido987 commented Aug 11, 2023

Hello,

As of now, we do not provide any code to help parse custom datasets, you have to do that yourself (using e.g. pandas or numpy). This should give some idea of how it can be done: https://github.com/huawei-noah/trustworthyAI/blob/master/competition/NeurIPS2023/demonstrative_code.ipynb

For the dataset you mentioned, some code to get started can be found here: https://github.com/FenTechSolutions/CausalDiscoveryToolbox/blob/master/cdt/data/loader.py

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