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CCF-GTEx Pilot

NIH Title: FAIR API

Primary Deliverables

Deliverables by Milestone

Deliverable or Milestone Due Date Status Links
1.2.1.1 Develop an OpenAPI specification (CCF-API) to be implemented on both HuBMAP and GTEx clouds for data interoperability when used from HuBMAP Exploration User Interface (EUI) or other compatible CCF-API clients (Joint) 12/21/2022 Complete spec
1.2.1.2 Extend CCF to capture Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) information in GTEx anatomogram data (IU) 12/31/2022 Complete dashboard
1.2.1.3 Spatially register GTEx tissue samples that currently overlap with HuBMAP using the CCF Registration User Interface (RUI) (Joint) 12/31/2022 Complete demo1 demo2 production
1.2.2.1 Implement and deploy the FAIR CCF-API for HuBMAP data in the HuBMAP cloud (IU) 12/31/2022 Complete live API code
1.2.2.2 Validate CCF ASCT+B tables using GTEx RNA and snRNAseq data and revising the tables as needed (Joint) 3/31/2022 Complete
1.2.3.1 Implement CCF-API client libraries in Python and JavaScript for use in most cloud workspaces (IU) 3/31/2022 Complete See above
1.2.3.2 Deploy EUI as a web component compatible with most cloud workspaces (IU) 3/31/2022 Complete demo gtex portal
1.2.3.3 Demonstrate cross-search capabilities for ASCT+B data in support of increased interoperability of GTEx and HuBMAP data (GTEx) 3/31/2022 Complete demo
1.2.4.1 Publish documentation for the CCF-API, data querying from cloud workspaces, and EUI integration into portals/cloud workspaces (IU) 6/30/2022 Complete API docs
1.2.4.2 Develop a video tutorial and training module to be hosted on the GTEx portal to help users find and interact with the data on the HuBMAP EUI and for inclusion in an online course (Joint) 6/30/2022 Complete video