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Consider returning median output type from linear_pool() #108

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eahowerton opened this issue Apr 21, 2024 · 2 comments
Open

Consider returning median output type from linear_pool() #108

eahowerton opened this issue Apr 21, 2024 · 2 comments

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@eahowerton
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In the hubEnsembles manuscript, we have a plot of quantile average and linear pool ensembles from the incident example data (Figure 5), where the median values are used as the point estimate. However, linear_pool() doesn't return results for median output type (I think), so I ended up having to add this clunky few lines of code, where I pull output_type_id == 0.5, rename the output_type to "median" and append it to the end of the linear_pool results.

model_output_plot <- linear_pool_ens |>
  dplyr::filter(output_type_id == 0.5, target == "wk inc flu hosp") |>
  dplyr::mutate(output_type = "median", output_type_id = NA)
model_output_plot <- dplyr::bind_rows(linear_pool_ens, model_output_plot)
@eahowerton
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Noting this is related to hubverse-org/hubData#26

@eahowerton
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New functions in hubUtils will be useful: hubverse-org/hubUtils#150

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