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I had this issue too. Turned out it was because I had grep aliased to always output line numbers (with the -n option) and bashmarks.sh doesn't expect grep output to be formatted that way. To fix the issue, I just modified my grep alias by removing the -n option. However, another fix that doesn't require changed your grep alias would be to enclose the instances of the grep command in the _l function in bashmarks.sh (line 113) with double quotes (ie, replace grep with "grep") so that the alias is not invoked.
When I type
g <tab>
I getg 1:IR_deployer
. My~/.sdirs
containsexport DIR_deployer="$HOME/Sites/deployer"
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