config.tex

%% config.tex
%% Copyright 2014 Jean Niklas L'orange
%
% This work may be distributed and/or modified under the
% conditions of the LaTeX Project Public License, either version 1.3
% of this license or (at your option) any later version.
% The latest version of this license is in
%   http://www.latex-project.org/lppl.txt
% and version 1.3 or later is part of all distributions of LaTeX
% version 2005/12/01 or later.
%
% This work has the LPPL maintenance status `maintained'.
% 
% The Current Maintainer of this work is Jean Niklas L'orange.
%
% This work consists of the files Makefile, thesis.tex, config.tex and
% fb/front.tex.

%% Layout
\usepackage[top=3cm]{geometry}    % Use geometry sizes for margins
\usepackage{mparhack}             % Fix margins
\usepackage[titles]{tocloft}      % For more control of TOC

%% Fix spacing between chapters, sections, subsections
\setlength{\cftbeforechapskip}{0pt}
\setlength{\cftbeforesecskip}{-10pt}
\setlength{\cftbeforesubsecskip}{-10pt}

%% Fonts and input encoding
\usepackage[utf8]{inputenc}     % Fix input encoding (ish)

% \usepackage{tgpagella}        % TeX Gyre Pagella as main font
% \usepackage[scaled]{beramono} % Correctly scaled (?) Bera Mono as monospace

% Use Bitstream charter as main font
\usepackage[charter, uppercase=upright]{mathdesign}
\usepackage{eulervm}          % Use eulervm for beautiful math fonts
\newcommand{\semibold}{\fontseries{sb}\selectfont}
\usepackage[T1]{fontenc}      % Correct font encoding (T1)
\usepackage{textcomp}         % Fix error messages that fonts are swapped out

%% Header and footer setup

\usepackage{fancyhdr} % Nice-looking headers
\pagestyle{fancy}

%% fancyhdr setup
\fancyfoot{}
\cfoot{}
\fancyhead{}
\fancyhead[RO,LE]{\thepage}
\fancyhead[RE]{\textit{Chapter \thechapter: \leftmark}}
\fancyhead[LO]{\textit{\rightmark}}

\renewcommand{\chaptermark}[1]{\markboth{#1}{}}
\renewcommand{\sectionmark}[1]{\markright{\thesection\quad#1}{}}
\setlength{\headheight}{15pt}

%% Citation and Bibliography selections.
\usepackage[citestyle=numeric,bibstyle=numeric,firstinits=true,backend=biber,%
  maxcitenames=2,mincitenames=1,maxbibnames=20,minbibnames=20,sorting=none,%
  urldate=long]{biblatex}

%% For a more visually pleasing layout (comment to save space)
\setlength{\parskip}{\bigskipamount}
\setlength{\parindent}{0pt}

%% Misc. packages
\usepackage{tabularx}                    % Better tabular
\usepackage{caption}                     % Better captions
\usepackage{chngcntr}                    % Change counter for listings
\usepackage{subcaption}                  % Add subcaptions
\usepackage{wrapfig}                     % Add wrapfigs
\usepackage{color}                       % Add in color (by name)
\usepackage[usenames,dvipsnames]{xcolor} % Many more color names here

\captionsetup{
  figurewithin=chapter,
  tablewithin=chapter
}

%% Links in the PDF
\definecolor{webgreen}{rgb}{0,.5,0} % Web green
\definecolor{webbrown}{rgb}{.6,0,0} % Web brown
\definecolor{solarizedblue}{HTML}{268BD2}

\newcommand{\cvar}[1]{\textit{#1}}

\usepackage{hyperref}
\hypersetup{
    %draft, % Smart to add so that one avoids sending the wrong PDF :). Tick off
            % when sending the real deal.
    colorlinks=true, linktocpage=true, pdfstartpage=1, pdfstartview=FitV,
    breaklinks=true, pdfpagemode=UseNone, pageanchor=true,
    pdfpagemode=UseOutlines,plainpages=false, bookmarksnumbered,
    bookmarksopen=true, bookmarksopenlevel=1, hypertexnames=true,
    pdfhighlight=/O,
    urlcolor=webbrown, linkcolor=RoyalBlue, citecolor=webgreen,
    pdftitle={\myTitle},
    pdfauthor={\textcopyright\ \myShortname, \myUni, \myDept},
    pdfsubject={\myProject},
}

%% Listing packages

%%% NB: REQUIRES pygments (python-pygments) installed to work.
\usepackage[section]{minted}        % Minted, good pygments wrapper
\usemintedstyle{colorful}           % Mintedstyle

\usepackage{algpseudocode}
\algrenewcommand\alglinenumber[1]{\scriptsize #1\quad}

% define ruled float, but with naming at bottom. Used for algorithms in
% listings.
\makeatletter
\newcommand\fs@plainruled{\def\@fs@cfont{\rmfamily}\let\@fs@capt\floatc@plain%
  \def\@fs@pre{\hrule\kern2pt}%
  \def\@fs@mid{\kern2pt\hrule\vspace\abovecaptionskip\relax}%
  \def\@fs@post{}%
  \let\@fs@iftopcapt\iffalse}

\newcommand\floatc@bottomruled[2]{{\@fs@cfont #1} #2\par}
\newcommand\fs@bottomruled{\def\@fs@cfont{\bfseries}\let\@fs@capt\floatc@bottomruled
  \def\@fs@pre{\hrule height.8pt depth0pt \kern2pt}%
  \def\@fs@post{\kern2pt\hrule\relax}%
  \def\@fs@mid{\kern2pt\hrule\kern2pt}%
  \let\@fs@iftopcapt\iffalse}
\makeatother

%% New environment for algorithms
\newenvironment{alglisting}[1][ht]
  {\floatstyle{plainruled}%
\restylefloat{listing}%
   \begin{listing}[#1]
  }{\end{listing}}
\counterwithin{listing}{chapter}

%% Math packages
\usepackage{amsmath}          % Symbols, math modes, etc.
\usepackage{mathtools}        % Typesetting and fix bugs in amssymb
\usepackage{amsthm}           % For theorems

\usepackage{xspace}   % Fix space between macros.
\usepackage{fixltx2e} % General fix on misc. other fails

%% Setting up chapter
\usepackage{titlesec}
\titlespacing\section{0pt}{0pt plus 4pt minus 2pt}{0pt plus 2pt minus 2pt}

\titleformat{\chapter}[display]
{\normalfont\filcenter\semibold}
{\sc{\Large \chaptertitlename\ \thechapter}}
{0pt}
{\LARGE}

%% By default, add fig/ as a place to look for graphics.
\usepackage{graphicx}
\graphicspath{{fig/}}

%% Add in \TODO command, for inline TODOS.
\newcommand{\TODO}[1]{\textcolor{red}{\textbf{TODO:} #1}}

%% Add in \O command, for use within math environments
\renewcommand{\O}{\mathcal{O}}

%% Clear left page
\newcommand*\skiponepage{%
  \clearpage
  \thispagestyle{empty}
  \hbox{}\newpage
}

%% Setting up alllistof

\providecommand\phantomsection{}
\renewcommand\listoflistingscaption{List of Listings}

\makeatletter
\newcommand\AllLists{%
  \begingroup%
  \clearpage
  \let\clearpage\relax
  \titleformat{\chapter}[display]%
  {\normalfont\filcenter\semibold}%
  {\sc{\Large \chaptertitlename\ \thechapter}}%
  {0pt}%
  {\Large}%
  [\vspace{-16pt}\rule{\linewidth}{0.4pt}]%
  \titlespacing\chapter{0pt}{0pt}{8pt}%
  \phantomsection
  \addcontentsline{toc}{chapter}{List of Tables}%
  \listoftables%
  \phantomsection
  \addcontentsline{toc}{chapter}{List of Figures}%
  \listoffigures%
  \phantomsection
  \addcontentsline{toc}{chapter}{\listoflistingscaption}%
  \listoflistings%
  \endgroup}
\makeatother