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Project Future - MiniFold

In a brief way, some promising ideas:

  • Train with crops of 64x64, not windows of 200x200 (and average at prediction time).
  • Use data from Multiple Sequence Alignments (MSA) such as paired changes bewteen AAs.
  • Use distance map as potential input for angle prediction (or vice versa?).
  • Use Physicochemical features of AAs as input.
  • Train with more data (in the cloud?)
  • Use predictions as constraints to the Rosetta Method for Protein Structure Prediction
  • Set up a prediction script/function from raw text/FASTA file
  • ...

"Science is a Work In Progress."

Contribute

Hey there! New ideas are welcome: open/close issues, fork the repo and share your code with a Pull Request. Clone this project to your computer:

git clone https://github.com/EricAlcaide/MiniFold

By participating in this project, you agree to abide by the thoughtbot code of conduct

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