You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Error in nodes[0]: must have node name belonging to known nodes
Error in nodes[5]: must NOT have additional properties: tolerance
Error in nodes[7]: must NOT have additional properties: tolerance
here is the workflow.cfg file content:
# ====================================================================# Antibody-antigen docking example with restraints from the antibody# paratope to the NMR-identified epitope on the antigen # ====================================================================# directory in which the scoring will be donerun_dir = "run1-CDR-NMR-CSP"# compute modemode = "local"ncores = 50# Self contained rundir (to avoid problems with long filename paths)self_contained = true# Post-processing to generate statistics and plotspostprocess = trueclean = truemolecules = [
"4G6K_clean.pdb",
"4I1B_clean.pdb"
]
# ====================================================================# Parameters for each stage are defined below, prefer full paths# ====================================================================
[topoaa]
[rigidbody]
# CDR to NMR epitope ambig restraintsambig_fname = "ambig-paratope-NMR-epitope.tbl"# Restraints to keep the antibody chains togetherunambig_fname = "antibody-unambig.tbl"sampling = 50
[caprieval]
reference_fname = "4G6M_matched.pdb"
[seletop]
# Selection of the top 40 best scoring complexesselect = 40
[flexref]
tolerance = 5# CDR to NMR epitope ambig restraintsambig_fname = "ambig-paratope-NMR-epitope.tbl"# Restraints to keep the antibody chains togetherunambig_fname = "antibody-unambig.tbl"
[caprieval]
reference_fname = "4G6M_matched.pdb"
[emref]
tolerance = 5# CDR to NMR epitope ambig restraintsambig_fname = "ambig-paratope-NMR-epitope.tbl"# Restraints to keep the antibody chains togetherunambig_fname = "antibody-unambig.tbl"
[caprieval]
reference_fname = "4G6M_matched.pdb"
[clustfcc]
plot_matrix = true
[seletopclusts]
# Selection of the top 4 best scoring complexes from each clustertop_models = 4
[caprieval]
reference_fname = "4G6M_matched.pdb"
[contactmap]
# ====================================================================
The text was updated successfully, but these errors were encountered:
Got the following error(s) while trying to upload a workflow in workflow builder (http://localhost:8080/builder):
Workflow archive failed to load.
here is the
workflow.cfg
file content:The text was updated successfully, but these errors were encountered: