-
Notifications
You must be signed in to change notification settings - Fork 43
/
DESCRIPTION
68 lines (68 loc) · 2.13 KB
/
DESCRIPTION
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
Package: iSEE
Title: Interactive SummarizedExperiment Explorer
Version: 2.17.3
Date: 2024-07-24
Authors@R: c(person("Kevin", "Rue-Albrecht", role = c("aut", "cre"), email = "kevinrue67@gmail.com", comment = c(ORCID = "0000-0003-3899-3872")),
person("Federico", "Marini", role="aut", email="marinif@uni-mainz.de", comment = c(ORCID = '0000-0003-3252-7758')),
person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com", comment = c(ORCID = '0000-0003-3833-2169')),
person("Aaron", "Lun", role="aut", email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = '0000-0002-3564-4813')))
Description: Create an interactive Shiny-based graphical user interface
for exploring data stored in SummarizedExperiment objects, including
row- and column-level metadata. The interface supports transmission of
selections between plots and tables, code tracking, interactive tours,
interactive or programmatic initialization, preservation of app state,
and extensibility to new panel types via S4 classes. Special attention
is given to single-cell data in a SingleCellExperiment object with
visualization of dimensionality reduction results.
Depends:
SummarizedExperiment,
SingleCellExperiment
Imports:
methods,
BiocGenerics,
S4Vectors,
utils,
stats,
shiny,
shinydashboard,
shinyAce,
shinyjs,
DT,
rintrojs,
ggplot2,
ggrepel,
colourpicker,
igraph,
vipor,
mgcv,
graphics,
grDevices,
viridisLite,
shinyWidgets,
listviewer,
ComplexHeatmap,
circlize,
grid
Suggests:
testthat,
covr,
BiocStyle,
knitr,
rmarkdown,
scRNAseq,
TENxPBMCData,
scater,
DelayedArray,
HDF5Array,
RColorBrewer,
viridis,
htmltools
URL: https://github.com/iSEE/iSEE
BugReports: https://github.com/iSEE/iSEE/issues
biocViews: CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction,
GeneExpression, GUI, ImmunoOncology, ShinyApps, SingleCell, Transcription,
Transcriptomics, Visualization
License: MIT + file LICENSE
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.2