mk_pred_transfer.sh

#!/usr/bin/bash

cdir=models/configurations/;
sdirDef=submission.transfer;
gpuDef=0;

sdir=$sdirDef;
gpu=$gpuDef;

cbase="$1"; shift;
cpt="$1"; shift;
if [ -n "$1" ]; then
    sdir="$1"; shift;
fi
if [ -n "$1" ]; then
    gpu="$1"; shift;
fi

out=$sdir.zip;


cat <<EOF
$0 configuration:

  configBase:     ${cbase:-MISSING}
    in folder $cdir
EOF
if [ -f "$cdir$cbase" ]; then
    ls -l "$cdir$cbase";
else
    echo "    Choices include:"
    ls -1 "$cdir"|grep 'pred.yaml$'|sed -e 's/^/      /';
fi

cat <<EOF
  checkpoint:     ${cpt:-MISSING}
  submissionDir:  $sdir
  gpuID:          $gpu
  output:         $out

EOF
[ -f "$cpt" ] && ls -l "$cpt";


if [ -z "$cpt" -o -n "$1" ]; then
    cat <<EOF
usage:    $0 {configBase} {checkpoint} [submissionDir] [gpuID]

	  The {configBase} file will be read from $cdir.
	  Predictions will be collected in folder submissionDir.
	  If not specified the default is: $sdirDef
	  For stage-1 support set submissionDir to: submission
	  The default gpuID is $gpuDef. Use a single GPU.

Examples: $0  config_baseline_stage2-pred.yaml \\
	      lightning_logs/YOURMODEL/checkpoints/YOURCHECK.ckpt

EOF
    exit
fi

if [ -d "$sdir" ]; then
    echo Deleting existing $sdir in 9 seconds unless you abort by Ctrl-C
    sleep 9 && rm -rf "$sdir/*" || exit;
else
    mkdir "$sdir";
    if [ -d "$sdir" ]; then
	echo "Created $sdir"
    else
	echo "Could not create $sdir - aborting.";
	exit
    fi
fi

for y in 2019 2020; do
    d=$sdir/$y;
    [ -d "$d" ] || mkdir "$d";
    for r in roxi_0008 roxi_0009 roxi_0010; do
	echo /=== $r $y for $cpt
	cin=$cdir$cbase;
	cnew=${cbase%.yaml}-$$-$r-$y.yaml;
	cout=$cdir$cnew;
	sed -e "s/%REGION%/$r/g" -e "s/%YEAR%/$y/" -e "s/%SDIR%/$sdir/" \
	    <"$cin" >"$cout";
	python train.py --gpus $gpu --mode predict --config_path "$cnew" \
	       --checkpoint "$cpt"
	rm $cout;
    done
done
for y in 2021; do
    d=$sdir/$y;
    [ -d "$d" ] || mkdir "$d";
    for r in boxi_0015 boxi_0034 boxi_0076 \
		       roxi_0004 roxi_0005 roxi_0006 roxi_0007 \
		       roxi_0008 roxi_0009 roxi_0010; do
	echo /=== $r $y for $cpt
	cin=$cdir$cbase;
	cnew=${cbase%.yaml}-$$-$r-$y.yaml;
	cout=$cdir$cnew;
	sed -e "s/%REGION%/$r/g" -e "s/%YEAR%/$y/" -e "s/%SDIR%/$sdir/" \
	    <"$cin" >"$cout";
	python train.py --gpus $gpu --mode predict --config_path "$cnew" \
	       --checkpoint "$cpt"
	rm $cout;
    done
done

if pushd $sdir; then
    echo /=== output summary
    ls -l */*
    fl=`find -type f|grep -v '/[.]'|sed -e 's/ /%20/g'`;
    for f in $fl; do
	f="${f//%20/ }";
	echo Compressing $f ...
	gzip -9f "$f" &
    done
    wait;
    echo ...zip packing $sdir
    [ -s "../$out" ] && rm -f "../$out";
    zip -0mr ../$out * -x .\* \*/.\*
    popd
    rmdir $sdir;
    ls -l $out;
else
    echo "Cannot change to $sdir - aborting"
    exit
fi
echo \\=== done