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Make conda installable [bioconda] #3

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jolespin opened this issue Mar 8, 2022 · 5 comments
Open

Make conda installable [bioconda] #3

jolespin opened this issue Mar 8, 2022 · 5 comments

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@jolespin
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jolespin commented Mar 8, 2022

This seems like an essential tool to have in metagenomics environments and would be (a little) easier to install in one-liner commands with more careful dependency checks. Having pip is ok too but it would make it that much more accessible so when I package up tools that depend on this I can just add this to the recipe.

@santonow
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I'm not sure if this solves your issue, but if you're creating an environment file (environment.yaml) for conda, you can specify that some dependencies have to be installed from pip:

- pip:
  - tiara

In any case, adding a conda recipe is in my TODO list.

@escamero
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Any updates on this being conda installable?

@santonow
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@escamero I'll try to do it by the end of October.

@santonow
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santonow commented Nov 1, 2022

Hi all,
You can now install tiara with python versions 3.7 and 3.8 using conda install -c conda-forge tiara. I'll need to make some adjustments to get it working with Python 3.9 (it works when installing through pip).

@jolespin
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jolespin commented Nov 1, 2022

Thank you! This will make it easier to include in conda recipes.

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3 participants