Add Baldr code to MALAMUTE [!6 merged]

[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 14:50

Merges integrate-baldr -> devel

This MR adds code formerly residing in Baldr to MALAMUTE. The MALAMUTE Makefile was also updated to accommodate the new code and new module dependencies.

Note: Baldr tests fail with the current MOOSE submodule version, so they are skipped for now until they can be fixed. This requires a drop in the minimum coverage until they are fixed up.

Refs #5

[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 14:53

added 1 commit

• 778bcc0d - Add issues to former baldr test specs for future SQA compliance (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)

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[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 14:53

marked this merge request as ready

[moosebuild]

CIVET Testing summary for 778bcc0

Precheck : Failed : Pre test
Documentation : Canceled by user
Mac Test : Canceled by user
Test : Canceled by user
Test Debug : Canceled by user
Non unity build : Canceled by user
Coverage : Canceled by user

[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 15:31

added 1 commit

• ec2c223e - Convert tabs to spaces (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)

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[moosebuild]

Job Precheck on ec2c223 wanted to post the following:

Your code requires style changes.

A patch was auto generated and copied here
You can directly apply the patch by running, in the top level of your repository:

curl -s https://mooseframework.inl.gov/malamute/docs/PRs/6/style.patch | git apply -v

Alternatively, with your repository up to date and in the top level of your repository:

git clang-format 1879fb9c9470bae21fef77abb4a0105bf71d40d9

[moosebuild]

CIVET Testing summary for ec2c223

Precheck : Failed : Format Check Clang 10.0
Documentation : Canceled by user
Mac Test : Canceled by user
Test : Canceled by user
Test Debug : Canceled by user
Non unity build : Canceled by user
Coverage : Canceled by user

[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 15:33

added 1 commit

• 9589153a - Perform clang-format (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)

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[moosebuild]

Job Coverage on 1d81614 wanted to post the following:

Coverage

	1879fb	#6 1d8161
	Total	Total	+/-	New
Rate	95.73%	67.58%	-28.15%	37.92%
Hits	359	494	+135	135
Misses	16	237	+221	221

Diff coverage report

Full coverage report

Warnings

• New new line coverage rate 37.92% is less than the suggested 90.0%

This comment will be updated on new commits.

[moosebuild]

Job Documentation on 1d81614 wanted to post the following:

View the site here

This comment will be updated on new commits.

[moosebuild]

CIVET Testing summary for 9589153

Precheck : Passed
Documentation : Failed : Build Docs
Mac Test : Passed
Test : Passed
Test Debug : Passed
Non unity build : Passed
Coverage : Failed : verify coverage

[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 16:20

added 2 commits

• 4141a461 - Fixup documentation (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)
• 0b9e3daf - Temporarily drop coverage minimum to 67 due to skipped baldr tests (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)

Compare with previous version

[moosebuild]

CIVET Testing summary for 0b9e3da

Precheck : Passed
Documentation : Passed
Mac Test : Passed
Test : Passed
Test Debug : Passed
Non unity build : Passed
Coverage : Allowed to fail : generate coverage

[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 18:09

requested review from @lindsayad

[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 18:35

added 82 commits

• 654bbb8 - Initial files
• 851f0de - Initial kc input file
• 5ce48b7 - Jacobian debugging
• 9900b7b - An interesting simulation result with close to unity material properties
• 6686024 - Better simulation after matching sandia mesh dimensions. Just doesn't seem...
• e78233a - Works better with pspg
• 05e7a4c - Include all the physics (without moving the mesh) yet
• 10d175d - Slightly change input file
• 4d84105 - Test runs but Jacobian is trash because of huge dependence on displacements missing in Jacobian
• 46e231b - Successful dimple using FDP. MOOSE hash d1500788c4
• 0e8f02f - Down to 10s of linear iterations for PJFNK with SMP preconditioner and...
• c7e68ef - successful 3D run although it's very slow. MOOSE has d1a69756f6
• 4b1c879 - Very nice sinusoidal welding simulation
• 0e45780 - Make sure that we subtract out mesh displacements from material derivative
• 101d306 - Update MOOSE
• 026202f - Update kc_jacobian_tester input file
• 35de0b9 - kc_jacobian_tester clean
• c031719 - kc_jacobian_tester clean with supg turned on
• d4f7cfe - kc_jacobian_tester clean in 1D with vel_x, disp_x, p, T
• ee42260 - Use correct far-field temperature in kc.i
• 2360125 - kc_jacobian_tester clean in 3 dimensions with all variables
• 9007182 - Update kc.i
• 3686125 - Add fairly worthless absolute value indicator
• de3b1ed - Add profiling input file
• ecee6e3 - Modify kc-profiling.i
• afad84e - Modify kc.i
• 506fc13 - Gold kc simulation
• bc1125c - Once around circle simulation
• ca35176 - Move kc to hot-once-around-circle and create cold-start input file
• a59c6ea - Calculate grad_surface_tension in the material
• cd02186 - Use new SurfaceTensionBCs in input file
• cc0814c - Add surface tension term calculation pieces to the boundary material
• 6a0153a - Surface tension boundary condition appears to have errors in its Jacobian
• 8115c68 - Remove simple_diffusion test
• 8a184f4 - Make sure INSConvectedMesh kernels are being applied to right variables
• 41edcdc - Add Jacobian test
• 137bbf1 - Add no surface tension versions (e.g. sucessful simulation versions) of hot and cold circles
• add389e - Captured the Marangoni affect and carried the simulation forward until element...
• 8512805 - Moved surface tension term calculation into boundary material
• fa57121 - Try second order elements in order to actually get curvatures
• 5887e05 - Ensure we're computing on the displaced mesh for materials that require coupled gradients
• 0a37b22 - Add INSTemperatureConvectedMesh to jacobian test
• 5e34ddc - Back to first order LAGRANGE for 2d-spot.
• 522b8f5 - Add 2nd order element jacobian tester
• b4a5c24 - Add second order Jacobian test
• 591c1c6 - Add 2D 2nd-order jacobian test
• 4e2ddde - Convert from m to mm
• 74d12eb - Add customizable unit scaling to the materials
• c928a6d - Testing conditioning. Non-uniform adaptivity appears to bump condition number...
• e0500fb - Organize input files
• 5d17b70 - Use new fparser capabilities in 2d-one-spot-scaled-1st-order.i
• e105db9 - Add Jacobian tests for non-uniform meshes and mixed LAGRANGE orders
• afb52d0 - Remove trailing underscore in include guards
• 56fa083 - gold-2d-one-spot-scaled-1st order illustrates displacement profile generated...
• d0caba5 - Allow tangential displacements at all boundaries. Also actually use the iterative solve
• 5e9ba15 - Rename app from Articuno to Baldr
• bfbd170 - Move Articuno files to Baldr names
• 9d1abca - 3d input file currently singular
• 65c669c - Remove singular value which should actually be present in all simulations...
• 9bb8f5b - Reorganize physics inputs
• 41ec512 - Add multi-scale-grain-growth inputs
• 201c7ec - Add syntax checks for all previously untested input files
• f6836b7 - Compile successful physics test cases
• 7e237f4 - Move INSConvectedMesh from regular to AD kernels block to work with current baldr master
• dde8652 - Make sure physics input files have correct ConvectedMesh settings
• e8f0079 - Add laser-welding module
• d3288e1 - Simplify the PseudoSolidStress calculation
• e7e8392 - Get vel_z name correct
• 6a9f132 - Fixup laser welding objects to current MOOSE standards
• 09ec606 - Remove all MOOSE headers
• 027f010 - Register everything with BaldrApp
• 093e30d - Fixup Baldr objects to current MOOSE standards
• eb48956 - Cold physics test initializes but fails with `new_size <=N` assertion from...
• 63cab95 - Convert BaldrApp to MalamuteApp and adjust Makefile (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)
• 0297315 - Add malamute header to former baldr source (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)
• d59dfc8 - Skip broken Baldr tests for now (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)
• 97da182 - Reorganize baldr input files and tests (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)
• c4e7ad1 - Add issues to former baldr test specs for future SQA compliance (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)
• 723230d - Convert tabs to spaces (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)
• ef4ee9c - Perform clang-format (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)
• fb69ab5 - Fixup documentation (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)
• 1d81614 - Temporarily drop coverage minimum to 67 due to skipped baldr tests (Transition Valhalla, Baldr, and Freya codes to MALAMUTE #5)

Compare with previous version

[moosebuild]

In GitLab by @lindsayad on Dec 23, 2021, 18:56

approved this merge request

[moosebuild]

In GitLab by @lindsayad on Dec 23, 2021, 18:56

enabled an automatic merge when the pipeline for 1d81614 succeeds

[moosebuild]

CIVET Testing summary for 1d81614

Precheck : Passed
Documentation : Passed
Mac Test : Passed
Test : Passed
Test Debug : Passed
Non unity build : Passed
Coverage : Allowed to fail : generate coverage

[moosebuild]

In GitLab by @lindsayad on Dec 23, 2021, 19:05

mentioned in commit 9953cd5