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/
environment.yml
229 lines (228 loc) · 7.69 KB
/
environment.yml
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name: r-3.6.1
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.1=anacondar_1
- binutils_impl_linux-64=2.33.1=he1b5a44_7
- binutils_linux-64=2.33.1=h9595d00_16
- bioconductor-annotate=1.64.0=r36_0
- bioconductor-annotationdbi=1.48.0=r36_0
- bioconductor-biobase=2.46.0=r36h516909a_0
- bioconductor-biocgenerics=0.32.0=r36_0
- bioconductor-biocparallel=1.20.0=r36he1b5a44_0
- bioconductor-biomformat=1.14.0=r36_0
- bioconductor-biostrings=2.54.0=r36h516909a_0
- bioconductor-delayedarray=0.12.0=r36h516909a_0
- bioconductor-deseq2=1.26.0=r36he1b5a44_0
- bioconductor-genefilter=1.68.0=r36hc99cbb1_0
- bioconductor-geneplotter=1.64.0=r36_0
- bioconductor-genomeinfodb=1.22.0=r36_0
- bioconductor-genomeinfodbdata=1.2.2=r36_0
- bioconductor-genomicranges=1.38.0=r36h516909a_0
- bioconductor-ihw=1.14.0=r36_0
- bioconductor-iranges=2.20.0=r36h516909a_0
- bioconductor-limma=3.42.0=r36h516909a_0
- bioconductor-lpsymphony=1.14.0=r36he1b5a44_0
- bioconductor-metagenomeseq=1.28.0=r36_0
- bioconductor-microbiome=1.8.0=r36_0
- bioconductor-multtest=2.42.0=r36h516909a_0
- bioconductor-phyloseq=1.30.0=r36_0
- bioconductor-rhdf5=2.30.0=r36he1b5a44_0
- bioconductor-rhdf5lib=1.8.0=r36h516909a_0
- bioconductor-s4vectors=0.24.0=r36h516909a_0
- bioconductor-summarizedexperiment=1.16.0=r36_0
- bioconductor-wrench=1.4.0=r36_0
- bioconductor-xvector=0.26.0=r36h516909a_0
- bioconductor-zlibbioc=1.32.0=r36h516909a_0
- bwidget=1.9.14=0
- bzip2=1.0.8=h516909a_2
- ca-certificates=2019.11.28=hecc5488_0
- cairo=1.16.0=hfb77d84_1002
- curl=7.65.3=hf8cf82a_0
- fontconfig=2.13.1=h86ecdb6_1001
- freetype=2.10.0=he983fc9_1
- fribidi=1.0.5=h516909a_1002
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_16
- gettext=0.19.8.1=hc5be6a0_1002
- gfortran_impl_linux-64=7.3.0=hdf63c60_2
- gfortran_linux-64=7.3.0=h553295d_16
- glib=2.58.3=h6f030ca_1002
- graphite2=1.3.13=hf484d3e_1000
- gsl=2.5=h294904e_1
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_16
- harfbuzz=2.4.0=h9f30f68_3
- icu=64.2=he1b5a44_1
- jpeg=9c=h14c3975_1001
- krb5=1.16.4=h2fd8d38_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libblas=3.8.0=14_openblas
- libcblas=3.8.0=14_openblas
- libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.2.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_2
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=14_openblas
- libopenblas=0.3.7=h5ec1e0e_6
- libpng=1.6.37=hed695b0_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.2.0=hdf63c60_0
- libtiff=4.1.0=hc3755c2_3
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.10=hee79883_0
- lz4-c=1.8.3=he1b5a44_1001
- make=4.2.1=h14c3975_2004
- ncurses=6.1=hf484d3e_1002
- openssl=1.1.1f=h516909a_0
- pango=1.42.4=ha030887_1
- pcre=8.43=he1b5a44_0
- pixman=0.38.0=h516909a_1003
- pthread-stubs=0.4=h14c3975_1001
- r-acepack=1.4.1=r36h9bbef5b_1004
- r-ade4=1.7_13=r36hcdcec82_1001
- r-ape=5.3=r36h0357c0b_1
- r-assertthat=0.2.1=r36h6115d3f_1
- r-backports=1.1.5=r36hcdcec82_0
- r-base=3.6.1=h3a67422_6
- r-base64enc=0.1_3=r36hcdcec82_1003
- r-bh=1.72.0_2=r36h6115d3f_0
- r-biocmanager=1.30.10=r36h6115d3f_0
- r-bit=1.1_14=r36hcdcec82_1
- r-bit64=0.9_7=r36hcdcec82_1001
- r-bitops=1.0_6=r36hcdcec82_1003
- r-blob=1.2.0=r36_1
- r-catools=1.17.1.3=r36h0357c0b_0
- r-checkmate=1.9.4=r36hcdcec82_1
- r-cli=2.0.0=r36h6115d3f_0
- r-cluster=2.1.0=r36h9bbef5b_2
- r-codetools=0.2_16=r36h6115d3f_1001
- r-colorspace=1.4_1=r36hcdcec82_1
- r-crayon=1.3.4=r36h6115d3f_1002
- r-data.table=1.12.8=r36hcdcec82_0
- r-dbi=1.1.0=r36h6115d3f_0
- r-dendextend=1.13.2=r36h6115d3f_0
- r-digest=0.6.23=r36h0357c0b_0
- r-dplyr=0.8.3=r36h0357c0b_3
- r-egg=0.4.5=r36h6115d3f_1
- r-ellipsis=0.3.0=r36hcdcec82_0
- r-evaluate=0.14=r36h6115d3f_1
- r-fansi=0.4.0=r36hcdcec82_1001
- r-farver=2.0.1=r36h0357c0b_0
- r-fastmatch=1.1_0=r36hcdcec82_1004
- r-fdrtool=1.2.15=r36hcdcec82_1002
- r-foreach=1.4.7=r36h6115d3f_0
- r-foreign=0.8_74=r36hcdcec82_0
- r-formatr=1.7=r36h6115d3f_1
- r-formula=1.2_3=r36h6115d3f_1002
- r-futile.logger=1.4.3=r36h6115d3f_1002
- r-futile.options=1.0.1=r36h6115d3f_1001
- r-gdata=2.18.0=r36h6115d3f_1002
- r-gdtools=0.2.1=r36h36050f4_0
- r-ggplot2=3.2.1=r36h6115d3f_0
- r-glmnet=3.0_2=r36h9bbef5b_0
- r-glue=1.3.1=r36hcdcec82_1
- r-gplots=3.0.1.1=r36h6115d3f_1
- r-gridextra=2.3=r36h6115d3f_1002
- r-gtable=0.3.0=r36h6115d3f_2
- r-gtools=3.8.1=r36hcdcec82_1003
- r-highr=0.8=r36h6115d3f_1
- r-hmisc=4.3_0=r36h9bbef5b_0
- r-htmltable=1.13.3=r36h6115d3f_0
- r-htmltools=0.4.0=r36h0357c0b_0
- r-htmlwidgets=1.5.1=r36h6115d3f_0
- r-igraph=1.2.4.2=r36h6786f55_0
- r-iterators=1.0.12=r36h6115d3f_0
- r-jpeg=0.1_8.1=r36hcdcec82_0
- r-jsonlite=1.6=r36hcdcec82_1001
- r-kernsmooth=2.23_16=r36h9bbef5b_0
- r-knitr=1.26=r36h6115d3f_0
- r-labeling=0.3=r36h6115d3f_1002
- r-lambda.r=1.2.4=r36h6115d3f_0
- r-lattice=0.20_38=r36hcdcec82_1002
- r-latticeextra=0.6_29=r36h6115d3f_0
- r-lazyeval=0.2.2=r36hcdcec82_1
- r-lifecycle=0.1.0=r36h6115d3f_0
- r-locfit=1.5_9.1=r36h516909a_1004
- r-magrittr=1.5=r36h6115d3f_1002
- r-markdown=1.1=r36hcdcec82_0
- r-mass=7.3_51.5=r36hcdcec82_0
- r-matrix=1.2_18=r36hcdcec82_0
- r-matrixstats=0.55.0=r36hcdcec82_0
- r-memoise=1.1.0=r36h6115d3f_1003
- r-mgcv=1.8_31=r36hcdcec82_0
- r-mime=0.8=r36hcdcec82_0
- r-munsell=0.5.0=r36h6115d3f_1002
- r-nlme=3.1_143=r36h9bbef5b_0
- r-nnet=7.3_12=r36hcdcec82_1003
- r-permute=0.9_5=r36_1
- r-phangorn=2.5.5=r36h0357c0b_1
- r-pillar=1.4.3=r36h6115d3f_0
- r-pkgconfig=2.0.3=r36h6115d3f_0
- r-plogr=0.2.0=r36h6115d3f_1002
- r-plyr=1.8.5=r36h0357c0b_0
- r-png=0.1_7=r36hcdcec82_1003
- r-prettyunits=1.0.2=r36h6115d3f_1002
- r-purrr=0.3.3=r36hcdcec82_0
- r-quadprog=1.5_8=r36hfa343cc_1
- r-r6=2.4.1=r36h6115d3f_0
- r-rcolorbrewer=1.1_2=r36h6115d3f_1002
- r-rcpp=1.0.3=r36h0357c0b_0
- r-rcpparmadillo=0.9.800.3.0=r36h0357c0b_0
- r-rcurl=1.95_4.12=r36hcdcec82_1
- r-reshape2=1.4.3=r36h0357c0b_1004
- r-rlang=0.4.2=r36hcdcec82_0
- r-rpart=4.1_15=r36hcdcec82_1
- r-rsqlite=2.1.5=r36h0357c0b_0
- r-rstudioapi=0.10=r36h6115d3f_2
- r-rtsne=0.15=r36he1b5a44_1
- r-scales=1.1.0=r36h6115d3f_0
- r-shape=1.4.4=r36_1002
- r-slam=0.1_47=r36hcdcec82_0
- r-snow=0.4_3=r36h6115d3f_1001
- r-stringi=1.4.3=r36h0e574ca_3
- r-stringr=1.4.0=r36h6115d3f_1
- r-survival=3.1_8=r36hcdcec82_0
- r-svglite=1.2.2=r36h0357c0b_3
- r-systemfonts=0.1.1=r36h0357c0b_1
- r-tibble=2.1.3=r36hcdcec82_1
- r-tidyr=1.0.0=r36h0357c0b_0
- r-tidyselect=0.2.5=r36h0357c0b_1001
- r-upsetr=1.4.0=r36h6115d3f_1
- r-utf8=1.1.4=r36hcdcec82_1001
- r-vctrs=0.2.1=r36hcdcec82_0
- r-vegan=2.5_6=r36h9bbef5b_0
- r-viridis=0.5.1=r36h6115d3f_1003
- r-viridislite=0.3.0=r36h6115d3f_1002
- r-withr=2.1.2=r36h6115d3f_1001
- r-xfun=0.11=r36h6115d3f_0
- r-xml=3.98_1.20=r36hcdcec82_1
- r-xtable=1.8_4=r36h6115d3f_2
- r-yaml=2.2.0=r36hcdcec82_1002
- r-zeallot=0.1.0=r36h6115d3f_1001
- readline=8.0=hf8c457e_0
- sed=4.7=h1bed415_1000
- tk=8.6.10=hed695b0_0
- tktable=2.10=h555a92e_3
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.9=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- zlib=1.2.11=h516909a_1006
- zstd=1.4.4=h3b9ef0a_1
- r-htmlwidgets
- r-plotly