pages.txt

diverse/commandline/estimatemem Estimate Memory Requirements
diverse/commandline/imagej Wrapper script for ImageJ
diverse/commandline/smoothhisto Smooth Histogram
diverse/start Diverse
events/ijconf2008 6th - 7th November 2008: ImageJ User and Developer Conference, Luxembourg
events/presentations_bunwarpj-consistent-and-elastic-registration-in-imagej bUnwarpJ: Consistent and Elastic Registration in ImageJ. Methods and Applications.
events/programme_posters_imagej-based-segmentation-image-quality ImageJ based segmentation, processing and evaluation of digital radiology phantom images
events/start Events
faq/general/are_there_any_papers_reporting_the_use_of_imagej FAQ: Are there any papers reporting the use of ImageJ
faq/general/can_i_contribute_to_the_imagej_community FAQ: Can I contribute to the ImageJ community?
faq/general/can_i_use_more_than_4_gb_of_memory FAQ: Can I use more than 4 GB of memory?
faq/general/companies FAQ: List of Companies That use ImageJ
faq/general/how_do_i_cite_imagej_in_a_publication FAQ: How do I cite ImageJ in a publication?
faq/general/how_do_i_report_a_bug FAQ: How do I report a bug?
faq/general/is_there_a_book_or_manual_to_imagej FAQ: Is there a book or manual to ImageJ?
faq/general/what_is_imagej FAQ: What is ImageJ?
faq/general/what_should_i_do_before_start_using_imagej_in_my_project FAQ: What should I do before start using ImageJ in my project?
faq/general/where_can_i_find_additonal_faqs_about_image_analysis_processing FAQ: Where can I find additonal FAQs about Image Analysis / Processing?
faq/general/which_file_formats_are_supported_by_imagej FAQ: Which file formats are supported by ImageJ
faq/macros/how_can_i_speed_up_a_macro FAQ: How can I speed up a macro?
faq/macros/how_do_i_make_a_macro_appear_in_the_plugins_menu FAQ: How do I make a macro appear in the Plugins Menu?
faq/macros/how_do_i_make_a_macro_run_automatically_when_imagej_starts FAQ: How do I make a macro run automatically when ImageJ starts?
faq/plugins/can_i_change_the_location_of_the_plugins_directory FAQ: Can I change the location of the plugins directory?
faq/plugins/where_can_i_find_plugins FAQ: Where can I find Plugins?
faq/technical/faq/how_do_i_quantify_a_gel_with_imagej FAQ: How do I quantify a gel with ImageJ ?
faq/technical/are_there_performance_statistics_to_compare_against_my_system FAQ: Are there performance statistics to compare against my system?
faq/technical/can_i_convert_a_large_stack_into_.avi_.gif_quicktime_without_loading_it FAQ: Can I convert a large stack into .avi, .gif, QuickTime without loading it?
faq/technical/how_can_i_understand_status_bar_mouse_informations FAQ: How do I get the information from the cursor in the status bar?
faq/technical/how_do_i_increase_the_memory_in_imagej FAQ: How do I increase the memory in ImageJ?
faq/technical/how_do_i_quantify_a_gel_with_imagej FAQ: How do I quantify a gel with ImageJ ?
faq/technical/how_do_i_run_imagej_without_a_graphics_environment_headless FAQ: How do I run ImageJ without a graphics environment (headless)?
faq/technical/how_do_i_run_the_garbage_collector_in_a_macro_or_plugin FAQ: How do I run the garbage collector in a macro or plugin?
faq/technical/how_do_i_set_up_imagej_to_deal_with_white_particles_on_a_black_background_by_default FAQ: How do I set up ImageJ to deal with white particles (on a black background) by default?
faq/technical/how_do_i_update_imagej FAQ: How do I update ImageJ?
faq/technical/how_to_find_the_code_behind_a_given_menu_command FAQ: How to find the code behind a given menu command?
faq/technical/i_need_an_old_version_of_the_ij.jar_file._where_can_i_get_it FAQ: I need an old version of the ij.jar file. Where can I get it?
faq/technical/my_image_stack_is_too_large FAQ: My image stack is too large!
faq/technical/what_are_the_algorithms_used_to_calculate_particle_area_and_perimeter FAQ: What are the algorithms used to calculate particle area and perimeter?
faq/technical/what_is_the_algorithm_used_in_automatic_thresholding FAQ: What is the algorithm used in automatic thresholding?
faq/technical/what_is_the_algorithm_used_in_find_edges FAQ: What is the algorithm used in Find Edges?
faq/start Frequently Asked Questions
fotos/ijconf2008/first First Day
fotos/ijconf2008/group Group Photo
fotos/ijconf2008/second Second Day
fotos/ijconf2008/social Social Event
fotos/ijconf2008 Photos: ImageJ User and Developer Conference 2008
fotos/start Photos
gui/analyze/analyze_particles Analyze Particles...
gui/analyze/calibrate Calibrate...
gui/analyze/clear_results Clear Results
gui/analyze/distribution Distribution
gui/analyze/gels Gels
gui/analyze/histogramme Histogram
gui/analyze/label Label
gui/analyze/measure Measure
gui/analyze/plot_profile Plot Profile
gui/analyze/set_measurements Set Measurements...
gui/analyze/set_scale Set Scale...
gui/analyze/summarize Summarize
gui/analyze/surface_plot Surface Plot...
gui/analyze/tools Tools
gui/edit/clear Clear
gui/edit/clear_outside Clear Outside
gui/edit/copy Copy
gui/edit/copy_to_system Copy to System
gui/edit/cut Cut
gui/edit/draw Draw
gui/edit/fill Fill
gui/edit/invert Invert
gui/edit/options Options
gui/edit/paste Paste
gui/edit/paste_control Paste Control...
gui/edit/selection Selection
gui/edit/undo Undo
gui/file/close 7. Close
gui/file/import 6. Import
gui/file/new New
gui/file/open Open
gui/file/open_next Open Next
gui/file/open_recent Open Recent
gui/file/open_samples Open Samples
gui/file/page_setup Page Setup...
gui/file/print Print...
gui/file/quit Quit
gui/file/revert Revert
gui/file/save Save
gui/file/save_as Save As
gui/help/about_imagej About ImageJ...
gui/help/about_plugins About Plugins
gui/help/documentation Documentation...
gui/help/imagej_news ImageJ News...
gui/help/imagej_web_site ImageJ Web Site...
gui/help/installation Installation...
gui/help/list_archive List Archive...
gui/help/macro_functions Macro Functions...
gui/help/macro_language Macro Language...
gui/help/macros Macros...
gui/help/plugins Plugins...
gui/help/search_website Search Website...
gui/help/source_code Source Code...
gui/image/adjust Adjust
gui/image/color Color
gui/image/crop Crop
gui/image/duplicate Duplicate
gui/image/hyperstacks HyperStacks
gui/image/lookup_tables Lookup Tables
gui/image/properties Properties...
gui/image/rename Rename
gui/image/rotate Rotate
gui/image/scale Scale
gui/image/show_info Show Info...
gui/image/stacks Stacks
gui/image/translate Translate
gui/image/type Type
gui/image/zoom Zoom
gui/plugins/compile_and_run Compile and Run...
gui/plugins/edit Edit...
gui/plugins/macros Macros
gui/plugins/new New...
gui/plugins/shortcuts Shortcuts
gui/plugins/utilities Utilites
gui/process/binary Binary
gui/process/enhance_contrast Enhance contrast
gui/process/fft FFT
gui/process/filters Filters
gui/process/find_edges Find edges
gui/process/image_calculator Image Calculator
gui/process/math Math
gui/process/noise Noise
gui/process/repeat_command Repeat command
gui/process/shadows Shadows
gui/process/sharpen Sharpen
gui/process/smooth Smooth
gui/process/subtract_background Subtract background
gui/window/cascade Cascade
gui/window/put_behind Put Behind
gui/window/show_all Show All
gui/window/tile Tile
gui/start GUI Commands
gui/start2 GUI Commands
gui/test test
howto/general/how_to_add_a_plugin How to add a plugin to the plugin list?
howto/general/how_to_create_video_tutorials How to create video tutorials
howto/general/how_to_use_this_documenation_wiki How to use this Documenation WIKI
howto/general/howto_upload_jar_files How to upload files
howto/general/imagej_performance_tuning ImageJ performance tuning
howto/java/how_to_convert_data_type_x_into_type_y_in_java How to convert data type X into type Y in Java
howto/java/how_to_set_or_change_the_default_java_jdk_version_on_os_x how_to_set_or_change_the_default_java_jdk_version_on_os_x
howto/java/imagej_performance_tuning ImageJ performance tuning
howto/plugins/how_to_install_a_plugin How to install a plugin?
howto/plugins/how_to_set_up_netbeans_to_work_with_imagej_and_matlab_together How to set up Netbeans to work with Imagej and MATLAB together
howto/plugins/howto_create_an_imagej_plugin_jar_file HowTo create an ImageJ plugin jar file: Pitfalls and Tips
howto/plugins/retrieving_the_optional_args_when_a_plugin_is_called_from_a_macro Retrieving the optional args when a plugin is called from a macro
howto/plugins/the_imagej_eclipse_howto The ImageJ Eclipse Howto
howto/plugins/the_imagej_netbeans_howto The ImageJ Netbeans Howto
howto/working/2010_conference_macros_workshop 2010 conference macros workshop
howto/working/creating_pseudocolor_images_using_imagej Creating Pseudocolor Images using ImageJ
howto/working/easily_modify_your_actionbar Easily modify your ActionBar
howto/working/easily_update_your_actionbar Easily update your ActionBar
howto/working/how_to_correct_background_illumination_in_brightfield_microscopy How to correct background illumination in brightfield microscopy
howto/working/how_to_import_compressed_videos_into_imagej_in_windows How to Import Compressed Videos into ImageJ in Windows
howto/working/how_to_use_the_macro_editor_s_debug_mode How to use the macro editor debug mode
howto/working/setting_up_ij_tools_in_galaxy Setting up ij tools in Galaxy
howto/working/setting_up_the_dcraw_plugin_on_macosx Setting up ij-dcraw plugin on MacOsX
howto/working/work_with_magic_montage Work with Magic Montage
howto/start HowTo
keyboard/altkey Alt Key Modifications
keyboard/arrowkey Arrow Keys
keyboard/buildin Built-in Shortcuts
keyboard/shiftkey Shift Key Modifications
keyboard/spacebar Space Bar Modifications
keyboard/start Keyboard Shortcuts
lib/processing/3d 3d
lib/processing/geometric_moments_library Image Moments Library (ImageJ-IML)
lib/processing/pixlib PixLib
lib/start Libraries
link/imagej/objectj objectj
link/start Links
macro/affine_consistent_elastic_registration Affine + Consistent Elastic 2D Image Registration
macro/analyze_stripes Analyze_Stripes
macro/auto_correlation Auto Correlation
macro/autofocus_hyperstack autofocus_hyperstack
macro/basic_diffusion_analysis basic_diffusion_analysis
macro/brenner_gradient Brenner Gradient
macro/calculating_stats_from_a_results_table calculating_stats_from_a_results_table
macro/diffusion_analysis_time_ensemble_average diffusion_analysis_time_ensemble_average
macro/distribution_plotter Distribution Plotter
macro/gfp-lc3_macro GFP-LC3
macro/import_metamorph_screen_acquisition_tile_data Stitch data from MetaMorph 7 "Screen Acquisition" module
macro/importzeisslut Import Zeiss lookup tables
macro/lsmtorgb Convert selected channels from LSM files to RGB
macro/mitpophagy_mitochondrial_morphology_content_lc3_colocalization_macro Mitophagy
macro/multiple_points Export / Import Multi-point set
macro/normalized_variance Normalized Variance
macro/open_multiple_images_at_once Open Multiple Images
macro/particle_in_cell-3d Particle in Cell-3D
macro/particle_properties_to_image Particle Properties to Image
macro/platemontage PlateMontage
macro/plot_zeroed_tracking_data plot_zeroed_tracking_data
macro/radial_distribution_function Radial Distribution Function
macro/radially_averaged_autocorrelation Radially Averaged Autocorrelation
macro/rgbtohex RGBtoHEX
macro/roi_color_coder ROI Color Coder
macro/squared_gradient Squared Gradient
macro/start Macros
macro/stddev_correlation Standard Deviation-Based Correlation
macro/tiled_autofocus_hyperstack tiled_autofocus_hyperstack
macro/variance Variance
playground/playground PlayGround
plugin/3d/3d_mandelbrot_fractals/start Introduction
plugin/3d/image5d/start Image5D
plugin/3d/phantomaj/start PhantomaJ
plugin/3d/rules-based_segmentation_and_tracking_4d_of_c._elegans_early_embryogenesis/start Generic 3D segmentation and classification in biological development
plugin/3d/sort_contact/start Sort contact
plugin/3d/tissue_organization_toolbox/start 3D Tissue Organization Toolbox
plugin/3d/trakem2/start TrakEM2
plugin/acquisition/dual_cell_density_apoptosis_macro/start dual_cell_density_apoptosis_macro
plugin/acquisition/imagejvi/start ImageJVI
plugin/aligning/align_4/start Align 4
plugin/aligning/align_rgb_planes/start Align_RGB_planes
plugin/aligning/align_slice/start Algin_Slice
plugin/aligning/bunwarpj/consistent_and_elastic_2d_image_registration/start bUnwarpJ
plugin/aligning/image_stabilizer/start Image Stabilizer
plugin/analysis/3d_analysis/start 3D Analysis
plugin/analysis/3d_mereotopology/start 3D MereoTopology
plugin/analysis/3d_object_counter/start 3D object counter
plugin/analysis/aatap/start AATAP
plugin/analysis/analyzeskeleton/start AnalyzeSkeleton
plugin/analysis/asa/start Sholl Analysis
plugin/analysis/autodetection_of_neuronal_labeling_in_histological_image_series/start Automatic detection of neuronal labeling in histological image series
plugin/analysis/clonaltools/start ClonalTools
plugin/analysis/colocalization_analysis_macro_for_red_and_green_puncta/start Green and Red Puncta Colocalization
plugin/analysis/colocalizationfinder/start Colocalization Finder
plugin/analysis/confined_displacement_algorithm_determines_true_and_random_colocalization/start Confined Displacement Algorithm Determines True and Random Colocalization
plugin/analysis/density_2d_3d/start density_2d_3d
plugin/analysis/details_about_multi-colocalisation_analysis/start Details about multi-colocalisation analysis
plugin/analysis/diffusion_multimodal/start Multi/Quad-Modal Anomalous Diffusion
plugin/analysis/distance_analysis_diana_2d_3d/start Distance Analysis (DiAna)
plugin/analysis/drop_cecille/start drop_cecille
plugin/analysis/droplet_counter/start Lipid Droplet Counter
plugin/analysis/feature_finder/start Feature Finder
plugin/analysis/figaro_psf_3d_optical_microscopy/start Plugin FIGARO: 3D PSF estimation for optical microscopy
plugin/analysis/find_min_max/start Find minimum and maximum
plugin/analysis/fleye/start FLEYE
plugin/analysis/fourier_shape_analysis/start Fourier Shape Analysis
plugin/analysis/frap_analysis/start FRAP Analysis
plugin/analysis/frap_normalization/start Frap Norm
plugin/analysis/geodesic_distances/start Chamfer distances and Geodesic diameters
plugin/analysis/heatmap_histogram/start HeatMap Histogram
plugin/analysis/human-in-the-loop_particle_analysis_beta/start Introduction
plugin/analysis/ivim_and_adc_analysis_tool/start Intravoxel Incoherent Motion IVIM and ADC
plugin/analysis/jacop_2.0/just_another_colocalization_plugin/start JACoP
plugin/analysis/lemos_asymetry_analysis/start Lemos Asymmetry Analysis
plugin/analysis/metroloj/start MetroloJ
plugin/analysis/micropatterned_single_cell_sorting_mscs/start MSCS (Micropatterned Single Cell Sorting)
plugin/analysis/microscope_image_correlation_spectroscopy/start Microscope Image Correlation Spectroscopy
plugin/analysis/minimum_separation_distance/start Minimum Separation Distance Between Boundaries
plugin/analysis/neurite-j/start Neurite-J
plugin/analysis/openmims/start OpenMIMS
plugin/analysis/poissonnmf/start PoissonNMF
plugin/analysis/radial_thickness_measure/start Radial thickness measure
plugin/analysis/sarconfocal/start SarConfoCal (Simultaneous Fluorescence and Sarcomere Length Measurements from LSCM Images)
plugin/analysis/sarcoptim/start SarcOptiM (High Frequency Online Sarcomere Length Measurement)
plugin/analysis/scratch_wound_assay_automatic_analysis_macro/start scratch_wound_assay_automatic_analysis_macro
plugin/analysis/shapelogic/start ShapeLogic
plugin/analysis/spatial_statistics_2d_3d/start Spatial statistics 2D/3D
plugin/analysis/three-way_pca/start three-way_pca
plugin/analysis/time_gated_phasor/start time_gated_phasor
plugin/analysis/ttorg_transverse_tubular_system_regularity_analysis/start TTorg (Transverse tubular system regularity analysis)
plugin/analysis/wand_tracker/start wand_tracker
plugin/collections/mitobo_-_a_microscope_image_analysis_toolbox/start MiToBo - A Microscope Image analysis ToolBox
plugin/color/channel_merger/start Channel Merger
plugin/color/chart_white_balance/start Chart_White_Balance
plugin/color/color_pixel_counter/start Color Pixel Counter
plugin/color/colour_deconvolution/optimizing_selection_of_unitary_optical_density_vectors/start COLOR DECONVOLUTION: OPTIMIZING HANDLING OF 3D UNITARY OPTICAL DENSITY VECTORS WITH POLAR COORDINATES
plugin/color/colour_deconvolution/start Colour_Deconvolution 2
plugin/color/conversions_between_rgb_color_space_and_lab_color_space/start Conversions between RGB color space and Lab color space
plugin/color/lut_panel/start Lut_Panel
plugin/color/set_min_and_max_values_for_lut/start Set minimum and maximum values for LUT
plugin/color/threshold_colour/start Threshold_Colour
plugin/examples/summary_stats_from_results_table/start summary_stats_from_results_table
plugin/filter/3d_edge_and_symmetry_filter/start Edge and Symmetry filter
plugin/filter/3d_filters/start 3D Filters
plugin/filter/3d_filters_with_jni/start 3D Fast Filters with JNI
plugin/filter/dic_processor/start DIC Processor
plugin/filter/differential_contrast_enhancement/start Introduction
plugin/filter/digital_darkfield_decomposition/start Digital Darkfield Decomposition
plugin/filter/edge_detection/start Edge Detection
plugin/filter/expression/start Expression and ExpressionNT
plugin/filter/fast_filters/start Fast Filters
plugin/filter/fit_polynomial/start Fit_Polynomial
plugin/filter/highpass_filter/start Highpass filter
plugin/filter/hill_shade/start Hill Shade
plugin/filter/lab_nonlocal_mean_with_same_pixel_luminance_neighborhood/start Lab non-local mean with same pixel luminance neighborhood
plugin/filter/line_lab_selective_median_filtering/start Line Lab selective median filtering
plugin/filter/mri_processor/start MRI Processor
plugin/filter/nonuniform_background_removal/start Nonuniform Background Removal
plugin/filter/periodic_boundary_blur/start Periodic Boundary Blur
plugin/filter/surface_blur/start Surface Blur
plugin/filter/thresholded_blur/start Thresholded Blur
plugin/inputoutput/apng/start Animated APNG Writer
plugin/inputoutput/bio_formats/start Bio-Formats
plugin/inputoutput/bruker_toolbox/start Bruker toolbox
plugin/inputoutput/dicom_open/start DICOM_open
plugin/inputoutput/hpgl/start HPGL_Reader
plugin/inputoutput/jcbf/start CBF Reader Plug-In
plugin/inputoutput/lsm_reader/start LSM Reader
plugin/inputoutput/lsmtoolbox/load_zeiss load_zeiss
plugin/inputoutput/lsmtoolbox/start LSMToolbox
plugin/inputoutput/nd_stacks_builder/start Metamorph nd & ROI files importer (nd stack builder)
plugin/inputoutput/okolab_data_import/start Okolab Data Import
plugin/inputoutput/pgm_16_bit_export/start start
plugin/inputoutput/picoquant_.pt3_image_reader/start Introduction
plugin/inputoutput/simple_ontology_based_image_retrieval/start simple_ontology_based_image_retrieval
plugin/inputoutput/sims_toolbox/start SIMS_Toolbox
plugin/inputoutput/the_tudor_dicom_toolkit/start Dicom Tools
plugin/inputoutput/tomoj/start TomoJ
plugin/morphology/3d_binary_morphological_filters/start 3D processing and analysis
plugin/morphology/3d_mathematical_morphology/start 3D Mathematical Morphology
plugin/morphology/analysis_3d/start Analysis_3D plugin package
plugin/morphology/apoptosis_and_cell_count_macro/start Apoptosis and Cell Density Macro
plugin/morphology/euclidean_minimum_spanning_tree/start Euclidean minimum spanning tree
plugin/morphology/fast_morphological_filters/start Fast Morphology
plugin/morphology/graymorphology/start graymorphology
plugin/morphology/mitochondrial_morphology_macro_plug-in/start Mitochondrial Morphology
plugin/morphology/mitochondrial_morphometry/start mitochondrial_morphometry
plugin/morphology/morphological_operators_for_imagej/start Morphological Operators for ImageJ
plugin/morphology/neurite_morphology_macro/start Neurite Morph Macro
plugin/morphology/skeletonize3d/start Skeletonize3D
plugin/segmentation/3d_spots_segmentation/start 3D Segmentation
plugin/segmentation/active_contour/start Active contour (Snake)
plugin/segmentation/adjustable_watershed/start Adjustable Watershed
plugin/segmentation/chow_and_kaneko_binarization/start Chow and Kaneko binarization
plugin/segmentation/combined_cortical_thickness/start start
plugin/segmentation/hysteresis_thresholding/start Hysteresis thresholding
plugin/segmentation/jslic/start jSLIC - superpixels
plugin/segmentation/livewire_plugin/start LiveWire Plugin
plugin/segmentation/morphological_segmentation/start Morphological Segmentation
plugin/segmentation/simple_image_pixel_editor/start Simple Image Pixel Editor
plugin/segmentation/spectral_phasor/start spectral_phasor
plugin/segmentation/threshold_colour/start Threshold_Colour
plugin/segmentation/thresholding_by_connection/start Thresholding by connection
plugin/segmentation/versatile_wand/start Versatile Wand Tool
plugin/segmentation/yawi_2d/start Yawi 2D
plugin/stack/stack_fitter/start Stack Fitter
plugin/stacks/3d_ij_suite/start 3D ImageJ Suite
plugin/stacks/3d_roi_manager/start 3D Roi Manager
plugin/stacks/3d_tools/start 3D Tools
plugin/stacks/attenuation_correction/start Attenuation correction
plugin/stacks/frame_projector/start Frame Projector
plugin/stacks/heatmap_from_stack/start HeatMap From Stack
plugin/stacks/hypervolume_browser/start HyperVolume_Browser
plugin/stacks/image5d/start Image5D
plugin/stacks/microscobioj/start MicroSCoBioJ
plugin/stacks/multi_image_stack_operator/start Multiple Image Stack Operator
plugin/stacks/nonuniform_background_removal/start Nonuniform Background Removal
plugin/stacks/normal_map_computing_using_ptm/start Computing a normal map from a 3D surface and several lightings (Polynomial Texture Mapping)
plugin/stacks/nuclear_analysis_plugin/start NucleusJ
plugin/stacks/perkin_elmer_reader/start Perkin Elmer Plugin
plugin/stacks/plot_stack_points/start Plot stack points
plugin/stacks/snake/start start
plugin/stacks/toolset_for_manual_extraction_of_best-focused_z-slices_from_hyperstack/start Introduction
plugin/utilities/action_bar/start Action Bar Plugin
plugin/utilities/alpha_channel/start Alpha Channel
plugin/utilities/annotation_roi_3d/start Annotation ROI 3D
plugin/utilities/bezier_curve_roi/start Bezier Curve ROI
plugin/utilities/cairm_image_splitter/start Cairn Image Splitter
plugin/utilities/contmensili/start contMensili
plugin/utilities/dicom_explode/start DICOM_explode
plugin/utilities/droplet/start Droplet: Drag and Drop file processor
plugin/utilities/figurej/docs FigureJ tips
plugin/utilities/figurej/start FigureJ
plugin/utilities/ij_ed/start IJ_Ed advanced editor for ImageJ
plugin/utilities/ijproxy/start IJProxy
plugin/utilities/ijupdate/start IJUpdate
plugin/utilities/imageflow/start Imageflow
plugin/utilities/layers_analysis/start Tapas Tutorial : Layers analysis
plugin/utilities/live_tools/start Introduction
plugin/utilities/livemacro/start Live Macro
plugin/utilities/midij_-_midi_plugin_for_imagej/start MidiJ v1.0
plugin/utilities/mri_cell_image_analyzer/start MRI Cell Image Analyzer
plugin/utilities/multi_undo/start Multi Undo
plugin/utilities/mvfg_-_multi-format_video_frame_grabber_imagej_plugin/start MVFG - Multi-format Video Frame Grabber ImageJ Plugin
plugin/utilities/neuronpersistentj/start NEURONPERSISTENTJ
plugin/utilities/pdf_macro_extension/start PDF Macro extension
plugin/utilities/pixel_inspector/start Pixel_Inspector
plugin/utilities/python_dm3_reader/start Python DM3 Reader
plugin/utilities/quadratic_curve_roi/start Quadratic Curve ROI
plugin/utilities/save_all/start SAVE ALL
plugin/utilities/seam_carving/start Seam Carving
plugin/utilities/serial_macro_extensions/start Serial Macro Extensions
plugin/utilities/synapsescountj/start SYNAPCOUNTJ
plugin/utilities/tapas/integrated_framework_for_automated_processing_and_analysis/start TAPAS : An integrated tool for batch processing and analysis of multi-dimensional images
plugin/utilities/tapas/list_of_available_modules/start list_of_available_modules
plugin/utilities/tapas_tutorial/2d_measurements_with_analyze_particles/start TAPAS Tutorial : 2D Measurements with AnalyzeParticles
plugin/utilities/tapas_tutorial/colocalisation/start TAPAS Tutorial : Colocalisation
plugin/utilities/tapas_tutorial/create_your_processing_pipeline/start TAPAS Tutorial : Create your Processing Pipeline I
plugin/utilities/tapas_tutorial/input_output_i/start TAPAS Tutorial Input/Output I
plugin/utilities/tapas_tutorial/measurement/start TAPAS Tutorial : Measurement
plugin/utilities/tapas_tutorial/segmentation/start TAPAS Tutorial : Segmentation
plugin/utilities/tapas_tutorial/signal_quantification/start TAPAS Tutorial : Quantification
plugin/utilities/wait_for_user/start Wait_For_User
plugin/aligning aligning
plugin/start Plugins
plugin/test The plugins
problem/allos/chan_luu_bracelets_sale chan_luu_bracelets_sale
problem/linux/alt-key_shortcuts_do_not_work Alt-key shortcuts do not work
problem/linux/assertion_c-_xlib.lock_failed._error "Assertion `c->xlib.lock' failed." error
problem/linux/cannot_drop_files_into_the_imagej_window_in_kde_4.x Cannot drop files into the ImageJ window in KDE 4.x
problem/linux/help_imagej_web_site..._does_not_work Help ImageJ Web Site... does not work
problem/linux/ubuntu_java Ubuntu Java
problem/start Known problems
templates/faq FAQ: @PAGE@
templates/gui @PAGE@
templates/howto @PAGE@
templates/info Template Info
templates/link @PAGE@
templates/plugin @PAGE@
templates/problem @PAGE@
templates/tutorial @PAGE@
templates/video @PAGE@
tutorial/general/watershed_3d 3D Watershed tutorial
tutorial/plugins/3d_ellipsoid Details about 3D ellipsoid fitting
tutorial/plugins/3d_maxima_finder 3D Maxima Finder tutorial
tutorial/working/3d_image_processing_and_analysis_with_imagej 3d Image Processing and Analysis with ImageJ
tutorial/working/tutorial_for_3d_roi_manager Tutorial for 3DRoiManager
tutorial/start Tutorials
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video/aligning/bunwarpj_basic_tutorial bUnwarpJ (v2.0) Basic Tutorial
video/analysis/fishing_for_data_and_other_imagej_features fishing for data and other imagej features
video/analysis/gel_quantification_analysis gel quantification analysis
video/analysis/particle_counting_-_automated_and_manual particle counting - automated and manual
video/analysis/winmentor_hyper_analyzer_demo1 winmentor_hyper_analyzer_demo1
video/beginner_help/imagej_beginner_s_tutorial ImageJ Beginner Tutorial
video/filters/how_the_watershed_filter_works how the watershed filter works
video/inputoutput/test test
video/segmentation/how_the_watershed_filter_works how the watershed filter works
video/utilities/creating_montages_with_magic_montage creating montages with magic montage
video/utilities/eclipse ImageJ Eclipse HowTo
video/utilities/using_the_wiimote_with_imagej using the wiimote with imagej
video/start Video Tutorials
wiki/dokuwiki DokuWiki
wiki/syntax Formatting Syntax
wiki/welcome Welcome to your new DokuWiki
wishlist/completed/16_bit_color 16 bit color
wishlist/completed/add_non-maximal_suppression_and_hysteresis_to_the_canny_edge_algorithm Add non-maximal suppression and hysteresis to the Canny edge algorithm
wishlist/completed/auto_updater Auto updater
wishlist/completed/bilateral_filtering Bilateral Filtering
wishlist/completed/customizable_right-click_menu_for_toolsets Customizable right-click menu for toolsets
wishlist/completed/freehand_and_selection_brush_roi_conversion Freehand and Selection Brush ROI conversion
wishlist/completed/keyboard_shortcuts_for_hyperstacks keyboard_shortcuts_for_hyperstacks
wishlist/completed/multiple_rois Multiple ROIs
wishlist/completed/retinex Retinex algorithm
wishlist/completed/roi_modification_plugin roi_modification_plugin
wishlist/completed/store_roi_as_tiff_tag_field Store ROI as TIFF tag (field)
wishlist/completed/voronoi_diagram Voronoi diagram
wishlist/functionality/roi_coordinates_in_physical_units ROI Coordinates in physical units
wishlist/gui/interactively_adjustable_intensity_lut_curves Interactively Adjustable intensity/LUT curves
wishlist/gui/keyboard_shortcuts_for_hyperstacks keyboard_shortcuts_for_hyperstacks
wishlist/gui/support_for_anisotropic_or_uneven_voxel_size Support for anisotropic or uneven voxel size
wishlist/procedure/alpha_shapes_-_concave_hull Alpha shapes and concave hull
wishlist/procedure/colorizing_algorithm Colorizing algorithm
wishlist/procedure/freehand_crop_and_exclusion Freehand crop and exclusion.
wishlist/procedure/tricubic_interpolation Tricubic Interpolation
wishlist/start Wishlist
create_new_content Create new content
imagej-documenation-wiki Welcome to the ImageJ Information and Documentation Portal
imaging_workshop Lucilinx Imaging Workshop
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