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1061.html
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1061.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<!-- See: http://trac.edgewall.org/wiki/TracInterfaceCustomization -->
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<title>
#1061 (Add axis causes exception in probe)
– ImageJ
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NOTICE! This is a static HTML version of a legacy ImageJ Trac ticket.
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<div id="content" class="ticket">
<h1 id="trac-ticket-title">
<a href="1061.html">Ticket #1061</a>
<span class="status">(closed defect: fixed)</span>
</h1>
<div id="ticket">
<div class="date">
<p>Opened 2012-03-07T15:48:30-06:00</p>
<p>Last modified 2012-03-08T15:40:57-06:00</p>
</div>
<h2 class="summary searchable">Add axis causes exception in probe</h2>
<table class="properties">
<tr>
<th id="h_reporter">Reported by:</th>
<td headers="h_reporter" class="searchable">
bdezonia
</td>
<th id="h_owner">Owned by:</th>
<td headers="h_owner">
bdezonia
</td>
</tr>
<tr>
<th id="h_priority">
Priority:
</th>
<td headers="h_priority">
major
</td>
<th id="h_milestone">
Milestone:
</th>
<td headers="h_milestone">
<strike>imagej2-b1-initial</strike>
</td>
</tr><tr>
<th id="h_component">
Component:
</th>
<td headers="h_component">
Plugins
</td>
<th id="h_version">
Version:
</th>
<td headers="h_version">
</td>
</tr><tr>
<th id="h_severity">
Severity:
</th>
<td headers="h_severity">
serious
</td>
<th id="h_keywords">
Keywords:
</th>
<td headers="h_keywords" class="searchable">
</td>
</tr><tr>
<th id="h_cc">
Cc:
</th>
<td headers="h_cc" class="searchable">
</td>
<th id="h_blockedby">
Blocked By:
</th>
<td headers="h_blockedby">
</td>
</tr><tr>
<th id="h_blocking">
Blocking:
</th>
<td headers="h_blocking">
</td>
<th>
</th>
<td>
</td>
</tr>
</table>
<div class="description">
<h3 id="comment:description">
Description
</h3>
<div class="searchable">
<p>
Create a new pure IJ2 float image. Add axis Z. Now move probe over image. Exception (below) thrown repeatedly.<br />
</p>
<p>
Debugging shows PixelRecorder has correct multidim coords. But it's like the PlanarImg internal reference never updated after the new ImgPlus assigned by add axis plugin.<br />
</p>
<p>
[ERROR] Exception during event handling:<br />
</p>
<blockquote>
<p>
[Event] imagej.ext.display.event.input.MsMovedEvent<br />
context = imagej.ImageJ@72b9dc79<br />
consumed = false<br />
display = imagej.ui.swing.sdi.display.SwingSdiImageDisplay@6f731eba<br />
modifiers = <br />
x = 511<br />
y = 413<br />
[Subscriber] imagej.ext.tool.DefaultToolService@5da36300<br />
[Method] protected void imagej.ext.tool.DefaultToolService.onEvent(imagej.ext.display.event.input.MsMovedEvent)<br />
</p>
</blockquote>
<p>
java.lang.IndexOutOfBoundsException: Index: 2, Size: 2<br />
</p>
<blockquote>
<p>
at java.util.ArrayList.RangeCheck(ArrayList.java:547)<br />
at java.util.ArrayList.get(ArrayList.java:322)<br />
at net.imglib2.img.planar.PlanarImg.update(PlanarImg.java:134)<br />
at net.imglib2.img.planar.PlanarImg.update(PlanarImg.java:1)<br />
at net.imglib2.type.numeric.real.FloatType.updateContainer(FloatType.java:89)<br />
at net.imglib2.img.planar.PlanarRandomAccess.setPosition(PlanarRandomAccess.java:166)<br />
at net.imglib2.img.planar.PlanarRandomAccess.setPosition(PlanarRandomAccess.java:175)<br />
at imagej.core.tools.PixelRecorder.setPosition(PixelRecorder.java:215)<br />
at imagej.core.tools.PixelRecorder.record(PixelRecorder.java:165)<br />
at imagej.core.tools.PixelProbe.onMouseMove(PixelProbe.java:70)<br />
at imagej.ext.tool.DefaultToolService.onEvent(DefaultToolService.java:244)<br />
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)<br />
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)<br />
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)<br />
at java.lang.reflect.Method.invoke(Method.java:597)<br />
at imagej.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:224)<br />
at imagej.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:1)<br />
at org.bushe.swing.event.ThreadSafeEventService.publish(ThreadSafeEventService.java:971)<br />
at org.bushe.swing.event.SwingEventService.publish(SwingEventService.java:78)<br />
at org.bushe.swing.event.ThreadSafeEventService.publish(ThreadSafeEventService.java:904)<br />
at imagej.event.DefaultEventService.publish(DefaultEventService.java:90)<br />
at imagej.ui.common.awt.AWTMouseEventDispatcher.mouseMoved(AWTMouseEventDispatcher.java:178)<br />
at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:313)<br />
at java.awt.AWTEventMulticaster.mouseMoved(AWTEventMulticaster.java:312)<br />
at java.awt.Component.processMouseMotionEvent(Component.java:6418)<br />
at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3285)<br />
at java.awt.Component.processEvent(Component.java:6142)<br />
at java.awt.Container.processEvent(Container.java:2085)<br />
at java.awt.Component.dispatchEventImpl(Component.java:4735)<br />
at java.awt.Container.dispatchEventImpl(Container.java:2143)<br />
at java.awt.Component.dispatchEvent(Component.java:4565)<br />
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)<br />
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4295)<br />
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)<br />
at java.awt.Container.dispatchEventImpl(Container.java:2129)<br />
at java.awt.Window.dispatchEventImpl(Window.java:2478)<br />
at java.awt.Component.dispatchEvent(Component.java:4565)<br />
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679)<br />
at java.awt.EventQueue.access$000(EventQueue.java:85)<br />
at java.awt.EventQueue$1.run(EventQueue.java:638)<br />
at java.awt.EventQueue$1.run(EventQueue.java:636)<br />
at java.security.AccessController.doPrivileged(Native Method)<br />
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)<br />
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)<br />
at java.awt.EventQueue$2.run(EventQueue.java:652)<br />
at java.awt.EventQueue$2.run(EventQueue.java:650)<br />
at java.security.AccessController.doPrivileged(Native Method)<br />
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)<br />
at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)<br />
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)<br />
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)<br />
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)<br />
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)<br />
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)<br />
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)<br />
</p>
</blockquote>
</div>
</div>
</div>
<div>
<h2 class="foldable">Change History</h2>
<div id="changelog">
<div class="change" id="trac-change-1">
<h3 class="change">
<span class="threading">
<span id="comment:1" class="cnum">
<a href="#comment:1">comment:1</a>
</span>
</span>
Changed 2012-03-08T15:40:57-06:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Status</strong>
changed from <em>new</em> to <em>closed</em>
</li><li>
<strong>Resolution</strong>
set to <em>fixed</em>
</li>
</ul>
<div class="comment searchable">
<p>
Fixed by 5a4479246e89ae5e3b4450184a864f3bc72ca8cb<br />
</p>
</div>
</div>
</div>
</div>
</div>
</div>
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</html>