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1457.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<!-- See: http://trac.edgewall.org/wiki/TracInterfaceCustomization -->
<head>
<title>
#1457 (Fix obviously failing commands [analysis])
– ImageJ
</title>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
<link rel="stylesheet" href="trac.css" type="text/css" /><link rel="stylesheet" href="ticket.css" type="text/css" /><link rel="stylesheet" href="tracvote.css" type="text/css" />
<link rel="stylesheet" type="text/css" href="style.css" />
</head>
<body>
<div id="main">
<div id="notice" style="width: 58em; max-width: 100%; margin-left: auto; margin-right: auto; border: 1px solid black; margin-bottom: 2em">
<table>
<tr>
<td style="font-size: 72px; color: firebrick; padding: 0 10px 0 10px">⚠</td>
<td>
<p style="margin: 0.4em">
NOTICE! This is a static HTML version of a legacy ImageJ Trac ticket.
</p>
<p style="margin: 0.4em">
The ImageJ project now
<a href="https://imagej.net/Issues">uses GitHub Issues</a> for issue tracking.
</p>
<p style="margin: 0.4em">
Please
<a href="https://github.com/imagej/imagej/issues/new">file all new issues</a>
there.
</p>
</td>
</tr>
</table>
</div>
<div id="content" class="ticket">
<h1 id="trac-ticket-title">
<a href="1457.html">Ticket #1457</a>
<span class="status">(new feature)</span>
</h1>
<div id="ticket">
<div class="date">
<p>Opened 2012-09-07T11:00:21-05:00</p>
<p>Last modified 2013-11-19T14:18:49-06:00</p>
</div>
<h2 class="summary searchable">Fix obviously failing commands [analysis]</h2>
<table class="properties">
<tr>
<th id="h_reporter">Reported by:</th>
<td headers="h_reporter" class="searchable">
bdezonia
</td>
<th id="h_owner">Owned by:</th>
<td headers="h_owner">
bdezonia
</td>
</tr>
<tr>
<th id="h_priority">
Priority:
</th>
<td headers="h_priority">
major
</td>
<th id="h_milestone">
Milestone:
</th>
<td headers="h_milestone">
imagej2-b8-analysis
</td>
</tr><tr>
<th id="h_component">
Component:
</th>
<td headers="h_component">
Core
</td>
<th id="h_version">
Version:
</th>
<td headers="h_version">
</td>
</tr><tr>
<th id="h_severity">
Severity:
</th>
<td headers="h_severity">
serious
</td>
<th id="h_keywords">
Keywords:
</th>
<td headers="h_keywords" class="searchable">
</td>
</tr><tr>
<th id="h_cc">
Cc:
</th>
<td headers="h_cc" class="searchable">
</td>
<th id="h_blockedby">
Blocked By:
</th>
<td headers="h_blockedby">
<a class="new" href="1313.html" title="Pencil tool not working at extremes">#1313</a>, <a class="closed" href="1336.html" title="Drawing Tools interact with Overlays">#1336</a>, <a class="closed" href="1431.html" title="Display range should never be 0">#1431</a>, <a class="new" href="1433.html" title="Plugins that return overlays can throw exceptions">#1433</a>, <a class="closed" href="1605.html" title="Exception thrown when many images opened simultaneously">#1605</a>, <a class="closed" href="1756.html" title="FITS image can appear upside down">#1756</a>, <a class="closed" href="1769.html" title="GIF reading/writing somewhat inconsistent">#1769</a>, <a class="closed" href="1813.html" title="Need a default selection tool">#1813</a>, <a class="closed" href="1841.html" title="File Save and Save As do not have default names">#1841</a>, <a class="closed" href="1852.html" title="HistogramPlot keeps IJ2 from exiting">#1852</a>, <a class="closed" href="1856.html" title="A exit hack">#1856</a>, <a class="closed" href="1881.html" title="CellImg VirtualStack support tricky for composite images">#1881</a>, <a class="closed" href="1888.html" title="Lookup table menu has %20's instead of spaces">#1888</a>, <a class="closed" href="1903.html" title="Color tables can get munged across legacy layer">#1903</a>, <a class="closed" href="1904.html" title="Table resulting from analyze particles has null title">#1904</a>, <a class="closed" href="1908.html" title="These images don't look right">#1908</a>, <a class="closed" href="1910.html" title="Overlay draws on wrong plane">#1910</a>, <a class="closed" href="1922.html" title="Delete data can throw exception">#1922</a>, <a class="closed" href="1930.html" title="Exception error during startup">#1930</a>, <a class="closed" href="1948.html" title="Brightness/Contrast">#1948</a>, <a class="closed" href="1958.html" title="NewImage ramp code is too resource intensive">#1958</a>, <a class="closed" href="1961.html" title="HistogramPlot displays incorrect statistics">#1961</a>, <a class="closed" href="1964.html" title="Angle overlay draws incorrectly">#1964</a>, <a class="closed" href="1966.html" title="AdaptiveMedian plugin will not run">#1966</a>, <a class="closed" href="1972.html" title="Type changer can no longer combine channels">#1972</a>, <a class="closed" href="1973.html" title="Event processing can hang">#1973</a>, <a class="closed" href="1981.html" title="Special:ChangeUploadPassword reports SSH error">#1981</a>, <a class="closed" href="1986.html" title="Crop can throw an exception">#1986</a>, <a class="closed" href="1990.html" title="Only one overlay will draw">#1990</a>, <a class="reopened" href="1992.html" title="Delete data can throw exception 2">#1992</a>, <a class="closed" href="1993.html" title="Channel draws in wrong color">#1993</a>, <a class="closed" href="1994.html" title="Select View is confusing">#1994</a>, <a class="closed" href="1995.html" title="Adjust threshold should use auto better">#1995</a>, <a class="closed" href="2002.html" title="Type change results wrong for this file">#2002</a>, <a class="closed" href="2005.html" title="Image Properties can mess up units">#2005</a>, <a class="closed" href="2006.html" title="Image Duplicate broken">#2006</a>, <a class="closed" href="2008.html" title="Brightness / contrast broken for float types">#2008</a>, <a class="closed" href="2014.html" title="Verify that services dispose in similar order to initialization">#2014</a>, <a class="closed" href="2015.html" title="Menu does not work on Linux">#2015</a>, <a class="closed" href="2019.html" title="Legacy plugins run and run">#2019</a>, <a class="closed" href="2020.html" title="Make Binary can flip pixels">#2020</a>, <a class="closed" href="2022.html" title="Null values should be allowed as inputs">#2022</a>, <a class="new" href="2028.html" title="Data does not always update correctly">#2028</a>, <a class="closed" href="2029.html" title="There are two Rotate... menu entries">#2029</a>
</td>
</tr><tr>
<th id="h_blocking">
Blocking:
</th>
<td headers="h_blocking">
</td>
<th>
</th>
<td>
</td>
</tr>
</table>
<div class="description">
<h3 id="comment:description">
Description
</h3>
<div class="searchable">
<p>
Some commands in IJ2 fail in a very apparent fashion. They should be addressed preferentially. See blockers to this ticket.<br />
</p>
</div>
</div>
</div>
<div>
<h2 class="foldable">Change History</h2>
<div id="changelog">
<div class="change" id="trac-change-1">
<h3 class="change">
<span class="threading">
<span id="comment:1" class="cnum">
<a href="#comment:1">comment:1</a>
</span>
</span>
Changed 2012-09-07T11:00:46-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1194</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-2">
<h3 class="change">
<span class="threading">
<span id="comment:2" class="cnum">
<a href="#comment:2">comment:2</a>
</span>
</span>
Changed 2012-09-07T11:01:09-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1313</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-3">
<h3 class="change">
<span class="threading">
<span id="comment:3" class="cnum">
<a href="#comment:3">comment:3</a>
</span>
</span>
Changed 2012-09-07T11:01:46-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1335</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-4">
<h3 class="change">
<span class="threading">
<span id="comment:4" class="cnum">
<a href="#comment:4">comment:4</a>
</span>
</span>
Changed 2012-09-07T11:02:08-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1429</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-5">
<h3 class="change">
<span class="threading">
<span id="comment:5" class="cnum">
<a href="#comment:5">comment:5</a>
</span>
</span>
Changed 2012-09-07T11:02:30-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1431</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-6">
<h3 class="change">
<span class="threading">
<span id="comment:6" class="cnum">
<a href="#comment:6">comment:6</a>
</span>
</span>
Changed 2012-09-07T11:02:59-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1336</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-7">
<h3 class="change">
<span class="threading">
<span id="comment:7" class="cnum">
<a href="#comment:7">comment:7</a>
</span>
</span>
Changed 2012-09-07T12:47:49-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1463</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-8">
<h3 class="change">
<span class="threading">
<span id="comment:8" class="cnum">
<a href="#comment:8">comment:8</a>
</span>
</span>
Changed 2012-09-07T12:48:19-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1463</em> removed
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-9">
<h3 class="change">
<span class="threading">
<span id="comment:9" class="cnum">
<a href="#comment:9">comment:9</a>
</span>
</span>
Changed 2012-09-13T11:07:48-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1473</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-10">
<h3 class="change">
<span class="threading">
<span id="comment:10" class="cnum">
<a href="#comment:10">comment:10</a>
</span>
</span>
Changed 2012-09-13T11:10:02-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1475</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-11">
<h3 class="change">
<span class="threading">
<span id="comment:11" class="cnum">
<a href="#comment:11">comment:11</a>
</span>
</span>
Changed 2012-09-13T11:10:30-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1476</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-12">
<h3 class="change">
<span class="threading">
<span id="comment:12" class="cnum">
<a href="#comment:12">comment:12</a>
</span>
</span>
Changed 2012-09-18T10:54:40-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1487</em> added
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-13">
<h3 class="change">
<span class="threading">
<span id="comment:13" class="cnum">
<a href="#comment:13">comment:13</a>
</span>
</span>
Changed 2012-10-03T11:48:22-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1429</em> removed
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-14">
<h3 class="change">
<span class="threading">
<span id="comment:14" class="cnum">
<a href="#comment:14">comment:14</a>
</span>
</span>
Changed 2012-10-10T13:59:53-05:00 by curtis
</h3>
<ul class="changes">
<li>
<strong>Milestone</strong>
changed from <em>imagej-2.0.0-beta6</em> to <em>imagej-2.0.0-beta7</em>
</li>
</ul>
<div class="comment searchable">
</div>
</div>
<div class="change" id="trac-change-15">
<h3 class="change">
<span class="threading">
<span id="comment:15" class="cnum">
<a href="#comment:15">comment:15</a>
</span>
</span>
Changed 2012-10-10T14:00:01-05:00 by curtis
</h3>
<ul class="changes">
<li>
<strong>Summary</strong>
changed from <em>Fix obviously failing commands (2.0.0-beta5)</em> to <em>Fix obviously failing commands (2.0.0-beta7)</em>
</li>
</ul>
<div class="comment searchable">
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<div class="change" id="trac-change-16">
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Changed 2012-10-10T14:57:19-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1194</em> removed
</li>
</ul>
<div class="comment searchable">
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<div class="change" id="trac-change-17">
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Changed 2012-10-10T15:08:54-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1473</em> removed
</li>
</ul>
<div class="comment searchable">
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<div class="change" id="trac-change-18">
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Changed 2012-10-10T15:11:09-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1475</em> removed
</li>
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<div class="comment searchable">
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Changed 2012-10-10T15:11:30-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1476</em> removed
</li>
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Changed 2012-10-10T15:19:25-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1487</em> removed
</li>
</ul>
<div class="comment searchable">
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Changed 2012-11-21T10:22:51-06:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Summary</strong>
changed from <em>Fix obviously failing commands (2.0.0-beta7)</em> to <em>Fix obviously failing commands (2.0.0-beta8)</em>
</li>
</ul>
<div class="comment searchable">
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<div class="change" id="trac-change-22">
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Changed 2012-12-06T10:20:23-06:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1433</em> added
</li>
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<div class="comment searchable">
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<div class="change" id="trac-change-23">
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Changed 2012-12-06T12:52:07-06:00 by curtis
</h3>
<ul class="changes">
<li>
<strong>Summary</strong>
changed from <em>Fix obviously failing commands (2.0.0-beta8)</em> to <em>Fix obviously failing commands [analysis]</em>
</li>
</ul>
<div class="comment searchable">
</div>
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Changed 2013-03-27T12:17:29-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1756</em> added
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Changed 2013-05-14T14:56:54-05:00 by bdezonia
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<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1870</em> added
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Changed 2013-05-17T14:48:02-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1870</em> removed
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Changed 2013-05-20T10:59:18-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1880</em> added
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Changed 2013-05-28T16:41:59-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1880</em> removed
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<div class="comment searchable">
<p>
(In <a class="closed ticket" href="1880.html" title="defect: Incorrect display range propagation (closed: fixed)">#1880</a>) This issue no longer apparent on the scifio-cells branch (soon to be merged)<br />
</p>
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Changed 2013-05-31T16:14:57-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1335</em> removed
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Changed 2013-06-04T10:36:40-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1903</em> added
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Changed 2013-06-04T11:04:33-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1904</em> added
</li>
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<a href="#comment:32">comment:32</a>
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Changed 2013-06-04T11:38:39-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1605</em> added
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<a href="#comment:33">comment:33</a>
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Changed 2013-06-04T11:41:19-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1769</em> added
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Changed 2013-06-04T11:41:46-05:00 by bdezonia
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<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1813</em> added
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Changed 2013-06-04T11:42:44-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1841</em> added
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Changed 2013-06-04T11:43:12-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1852</em> added
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Changed 2013-06-04T11:43:39-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1856</em> added
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<div class="change" id="trac-change-38">
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<a href="#comment:38">comment:38</a>
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Changed 2013-06-04T11:45:34-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1881</em> added
</li>
</ul>
<div class="comment searchable">
<p>
(In <a class="closed ticket" href="1881.html" title="defect: CellImg VirtualStack support tricky for composite images (closed: moved)">#1881</a>) Note that scifio-cells has been merged to master.<br />
</p>
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Changed 2013-06-04T11:46:43-05:00 by bdezonia
</h3>
<ul class="changes">
<li>
<strong>Blocked By</strong>
<em>1888</em> added
</li>
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