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1851.html
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1851.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<!-- See: http://trac.edgewall.org/wiki/TracInterfaceCustomization -->
<head>
<title>
#1851 (Fix Fiji issues with sezpoz)
– ImageJ
</title>
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<table>
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<td style="font-size: 72px; color: firebrick; padding: 0 10px 0 10px">⚠</td>
<td>
<p style="margin: 0.4em">
NOTICE! This is a static HTML version of a legacy ImageJ Trac ticket.
</p>
<p style="margin: 0.4em">
The ImageJ project now
<a href="https://imagej.net/Issues">uses GitHub Issues</a> for issue tracking.
</p>
<p style="margin: 0.4em">
Please
<a href="https://github.com/imagej/imagej/issues/new">file all new issues</a>
there.
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</td>
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<div id="content" class="ticket">
<h1 id="trac-ticket-title">
<a href="1851.html">Ticket #1851</a>
<span class="status">(closed defect: fixed)</span>
</h1>
<div id="ticket">
<div class="date">
<p>Opened 2013-05-07T19:40:11-05:00</p>
<p>Last modified 2013-05-07T21:51:04-05:00</p>
</div>
<h2 class="summary searchable">Fix Fiji issues with sezpoz</h2>
<table class="properties">
<tr>
<th id="h_reporter">Reported by:</th>
<td headers="h_reporter" class="searchable">
dscho
</td>
<th id="h_owner">Owned by:</th>
<td headers="h_owner">
dscho
</td>
</tr>
<tr>
<th id="h_priority">
Priority:
</th>
<td headers="h_priority">
major
</td>
<th id="h_milestone">
Milestone:
</th>
<td headers="h_milestone">
<strike>imagej2-b7-ndim-data</strike>
</td>
</tr><tr>
<th id="h_component">
Component:
</th>
<td headers="h_component">
Core
</td>
<th id="h_version">
Version:
</th>
<td headers="h_version">
</td>
</tr><tr>
<th id="h_severity">
Severity:
</th>
<td headers="h_severity">
serious
</td>
<th id="h_keywords">
Keywords:
</th>
<td headers="h_keywords" class="searchable">
</td>
</tr><tr>
<th id="h_cc">
Cc:
</th>
<td headers="h_cc" class="searchable">
curtis
</td>
<th id="h_blockedby">
Blocked By:
</th>
<td headers="h_blockedby">
</td>
</tr><tr>
<th id="h_blocking">
Blocking:
</th>
<td headers="h_blocking">
<a class="closed" href="1608.html" title="Fix build system issues [ndim-data]">#1608</a>, <a class="closed" href="1729.html" title="Clean up after fiji.sc move to Madison [ndim-data]">#1729</a>
</td>
<th>
</th>
<td>
</td>
</tr>
</table>
<div class="description">
<h3 id="comment:description">
Description
</h3>
<div class="searchable">
<p>
Every since fiji-compat depends on scijava-common, there is a problem with sezpoz: basically, any plugin implementing an interface defined in ij-[a-z]*.jar fails, including the updater's UploaderService and the Help>Upload Sample Image command.<br />
</p>
<p>
The issue has been addressed in <a class="ext-link" href="https://java.net/jira/browse/SEZPOZ-14"><span class="icon"> </span>https://java.net/jira/browse/SEZPOZ-14</a> but not merged upstream yet (to be fair, the bug is only 5 days old now, even if it offers an easily applyable patch series ready to go). Since the problems persist until we upload a new sezpoz version, deploy a new, IJ2-specific, sezpoz version and upload that to the ImageJ update site.<br />
</p>
</div>
</div>
</div>
<div>
<h2 class="foldable">Change History</h2>
<div id="changelog">
<div class="change" id="trac-change-1">
<h3 class="change">
<span class="threading">
<span id="comment:1" class="cnum">
<a href="#comment:1">comment:1</a>
</span>
</span>
Changed 2013-05-07T21:50:15-05:00 by dscho
</h3>
<ul class="changes">
<li>
<strong>Cc</strong>
<em>curtis</em> added
</li><li>
<strong>Status</strong>
changed from <em>new</em> to <em>closed</em>
</li><li>
<strong>Resolution</strong>
set to <em>fixed</em>
</li>
</ul>
<div class="comment searchable">
<p>
I deployed sezpoz-1.9-imagej via scijava-common's release-version.sh (and updated <a class="ext-link" href="https://github.com/dscho/sezpoz"><span class="icon"> </span>https://github.com/dscho/sezpoz</a> accordingly).<br />
</p>
<p>
Then I bumped the SciJava POM version (actually twice because I first had to update it to reflect the new sezpoz version and then the new scijava-common version).<br />
</p>
<p>
After that, I uploaded the relevant files to the ImageJ update site.<br />
</p>
<p>
Unfortunately, a further change in Fiji was necessary: since the Class-Path: entry in fiji-compat no longer reflected the correct file names, I had to upload a new one. Unfortunately, the updater ignores the Class-Path: entries when calculating the checksum, so I just merged an early part of the ij-legacy branch to make fiji-compat really different to be able to download it.<br />
</p>
<p>
But now uploading (both to an update site and to ImageJ's sample uploader) works again!<br />
</p>
</div>
</div>
<div class="change" id="trac-change-2">
<h3 class="change">
<span class="threading">
<span id="comment:2" class="cnum">
<a href="#comment:2">comment:2</a>
</span>
</span>
Changed 2013-05-07T21:51:04-05:00 by dscho
</h3>
<div class="comment searchable">
<p>
Aaargh! I just realized that I failed to use 1.9.1-imagej as we agreed upon. Bah! Will pay more attention next time. Sorry!<br />
</p>
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