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TranscriptsToBed tool help

TranscriptsToBed (2023_03-63-gec44de43)

Converts a text file with transcript names to a BED file.

Mandatory parameters:
  -mode <enum> Mode: gene = start/end of the transcript, exon = start/end of all exons of the transcript.
               Valid: 'gene,exon'

Optional parameters:
  -in <file>   Input TXT file with one transcript name per line. If unset, reads from STDIN.
               Default value: ''
  -out <file>  Output BED file. If unset, writes to STDOUT.
               Default value: ''
  -test        Uses the test database instead of on the production database.
               Default value: 'false'

Special parameters:
  --help       Shows this help and exits.
  --version    Prints version and exits.
  --changelog  Prints changeloge and exits.
  --tdx        Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

TranscriptsToBed changelog

TranscriptsToBed 2023_03-63-gec44de43

2023-05-25 First version.

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