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VcfAdd tool help

VcfAdd (2022_11-75-gf99b2041)

Appends variants from a VCF file to another VCF file.

VCF header lines are taken from 'in' only.

Mandatory parameters:
  -in2 <file>           Input VCF file that is added to 'in'.

Optional parameters:
  -in <file>            Input VCF file to add 'in2' to.
                        Default value: ''
  -out <file>           Output VCF file with variants from 'in' and 'in2'.
                        Default value: ''
  -filter <string>      Tag variants from 'in2' with this filter entry.
                        Default value: ''
  -filter_desc <string> Description used in the filter header - use underscore instead of spaces.
                        Default value: ''
  -skip_duplicates      Skip variants from  'in2' which are also contained in 'in'.
                        Default value: 'false'

Special parameters:
  --help                Shows this help and exits.
  --version             Prints version and exits.
  --changelog           Prints changeloge and exits.
  --tdx                 Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

VcfAdd changelog

VcfAdd 2022_11-75-gf99b2041

2022-12-08 Initial implementation.

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