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repFilter by CDR3.nt list #378

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tdfy opened this issue Sep 6, 2023 · 1 comment
Closed

repFilter by CDR3.nt list #378

tdfy opened this issue Sep 6, 2023 · 1 comment

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@tdfy
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tdfy commented Sep 6, 2023

Hello,

I would like to filter a repertoire file ( immdata ) by a list of CDR3.nt sequences contained in a df, dat2$CDR3.nt. Please advise how best to proceed. Thanks.

repFilter(immdata, .method = "by.clonotype", .query = list(CDR3.nt = include(dat2$CDR3.nt)))

@tdfy
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tdfy commented Sep 7, 2023

immdata$data$x <- immdata$data$x %>% distinct(.$CDR3.nt, .keep_all = TRUE)

@tdfy tdfy closed this as completed Sep 7, 2023
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