theoretical predictions for R0

[philipus]

Where is the part in the Code to get the theoretical predictions for R0?

[s-mishra]

extract Rt from out/fit like out$Rt

[philipus]

apply((as.matrix(out$Rt[,1,])),2,median) for the intial R0?

[gustavdelius]

@philipus , for the initial R0 you should look in out$mu.

[philipus]

oh , I thought mu is the one from the fit to the data and not the theoretical one. Sorry that i am bothering you so heavily.

[flaxter]

mu is the parameter giving our estimate of the initial R0 for each country. It is inferred from the data. Can you clarify what you mean by "theoretical one"? Are you asking what prior we place on mu?

…

On Thu, Apr 9, 2020 at 6:47 PM Filip Floegel ***@***.***> wrote: oh , I thought mu is the one from the fit to the data and not the theoretical one. Sorry that i am bothering you so heavily. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#40 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAAOPW3UZQ4U5ZL4RL7FVOTRLYC23ANCNFSM4MEWC7NQ> .

[philipus]

Figure 18 in Report 13