This repository contains the functionality to standardize the data of the target specie list as provided by De Vlaamse Waterweg (DVW) to a Darwin Core Archive that can be harvested by GBIF.
source data → Darwin Core mapping script → generated Darwin Core files
The repository structure is based on Cookiecutter Data Science and the Checklist recipe. Files and directories indicated with GENERATED
should not be edited manually.
├── README.md : Description of this repository
├── LICENSE : Repository license
├── dvw-target-list.Rproj : RStudio project file
├── .gitignore : Files and directories to be ignored by git
│
├── src
│ ├── dwc_mapping.Rmd : Darwin Core mapping script
│ ├── _site.yml : Settings to build website in docs/
│ └── index.Rmd : Template for website homepage
│
├── docs : Repository website GENERATED
│
└── data
├── raw : Source data, input for mapping script
└── processed : Darwin Core output of mapping script GENERATED
- Click on
Use this template
to create a new repository on your account - Open the RStudio project file
- Open the
dwc_mapping.Rmd
R Markdown file in RStudio - Install any required packages
- Click
Run > Run All
to generate the processed data - Alternatively, click
Build > Build website
to generate the processed data and build the website indocs/
(advanced)
MIT License for the code and documentation in this repository. The included data is released under another license.